Stem-loop sequence ath-MIR822

Accession MI0005379
Description Arabidopsis thaliana miR822 stem-loop
Gene family MIPF0001199; MIR822
Stem-loop 
----           a        uaua             c             cg                    cg     a         c   cc           a           -       a   ucguac             auguuaaugucauaaacuuua 
    cgaccuuaagu uaaguaga    uggggauguaacg auguuguuuucug  ggaagcauuugcacauguuu  uggag augaaauca auu  auacaugaaua uaauuaccuuu uagauag aca      ugcuugaaaaaac                     u
    ||||||||||| ||||||||    ||||||||||||| |||||||||||||  ||||||||||||||||||||  ||||| ||||||||| |||  ||||||||||| ||||||||||| ||||||| |||      |||||||||||||                      
    gcuggaauuca auucaucu    accccuacguugc uauaacaaaggac  cuuucguaaacguguacaaa  accuc uauuuuagu uaa  uauguacuuau auuaauggaag aucuauc ugu      acgaacuuuuuug                     g
uguu           c        ----             a             au                    au     c         a   aa           c           u       g   ------             cgaaaaauauccacaaaagua
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Deep sequencing
reads, experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr5: 897020-897356 [-]
intergenic

Mature sequence ath-miR822

Accession MIMAT0004239
Sequence

50 -  

ugcgggaagcauuugcacaug

 - 70

Get sequence
Evidence experimental; 454 [1], Solexa [2]
Validated targets

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).