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miRBase |
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Stem-loop sequence ath-MIR822 |
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Accession | MI0005379 (change log) | ||||
Description | Arabidopsis thaliana miR822 stem-loop | ||||
Gene family | MIPF0001199; MIR822 | ||||
Literature search |
4 open access papers mention ath-MIR822 | ||||
Stem-loop |
---- a uaua c cg cg a c cc a - a ucguac auguuaaugucauaaacuuua 5' cgaccuuaagu uaaguaga uggggauguaacg auguuguuuucug ggaagcauuugcacauguuu uggag augaaauca auu auacaugaaua uaauuaccuuu uagauag aca ugcuugaaaaaac u ||||||||||| |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||| ||||||||||| ||||||||||| ||||||| ||| ||||||||||||| 3' gcuggaauuca auucaucu accccuacguugc uauaacaaaggac cuuucguaaacguguacaaa accuc uauuuuagu uaa uauguacuuau auuaauggaag aucuauc ugu acgaacuuuuuug g uguu c ---- a au au c a aa c u g ------ cgaaaaauauccacaaaagua |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence ath-miR822-5p |
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Accession | MIMAT0004239 |
Previous IDs | ath-miR822 |
Sequence |
50 - ugcgggaagcauuugcacaug - 70 |
Evidence | experimental; 454 [1], Illumina [2] |
Mature sequence ath-miR822-3p |
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Accession | MIMAT0032018 |
Sequence |
270 - ugugcaaaugcuuucuacagg - 290 |
Evidence | not experimental |
References |
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1 |
PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
Genes Dev. 20:3407-3425(2006).
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2 |
PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
J Exp Bot. 61:165-177(2010).
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