Stem-loop sequence mdo-mir-20a

Accession

MI0005357 (change log)

Description

Monodelphis domestica miR-20a stem-loop

Gene family

MIPF0000001; mir-17

Stem-loop

   ugaa  ---g      uuu    c   -a                 g   -  uu 
5'     ag    acagcu   guag acu  aagugcuuauagugcag uag ug  u
       ||    ||||||   |||| |||  ||||||||||||||||| ||| ||   
3'     uc    ugucga   cguc uga  uucacgaguauuacguc auc au  a
   --ca  aaga      --u    a   ag                 -   u  ug 

Deep sequencing

23088 reads, 260 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr7: 108468430-108468531 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mdo-mir-20a

• mdo-mir-17: chr7: 108468894-108468978 [-]
• mdo-mir-18a: chr7: 108468760-108468831 [-]
• mdo-mir-19a: chr7: 108468609-108468689 [-]
• mdo-mir-20a: chr7: 108468430-108468531 [-]
• mdo-mir-19b-1: chr7: 108468305-108468393 [-]
• mdo-mir-92a-1: chr7: 108468191-108468268 [-]

Database links

• EntrezGene:Mir20
• miRBase Tracker:MI0005357

Mature sequence mdo-miR-20a-5p

• Accession: MIMAT0004169
• Sequence: 24 - uaaagugcuuauagugcagguag - 46
• Deep sequencing: 22303 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mdo-miR-20a-5p

Mature sequence mdo-miR-20a-3p

• Accession: MIMAT0026707
• Sequence: 60 - acugcauuaugagcacuugaagu - 82
• Deep sequencing: 774 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mdo-miR-20a-3p

References

1. PMID:17965199 "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica" Devor EJ, Samollow PB J Hered. 99:66-72(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).