Stem-loop sequence osa-MIR820b

Accession MI0005264
Description Oryza sativa miR820b stem-loop
Gene family MIPF0000348; MIR820
Stem-loop 
guaca       g               ag    -     g           c    u        cau            cg     -a    u     a 
     ugcgucg ccucguggauggacc  gagc ucgac uuccuuaaggc guuc uuccgacc   acaagguuccgu  ccugc  uugu ccaag g
     ||||||| |||||||||||||||  |||| ||||| ||||||||||| |||| ||||||||   ||||||||||||  |||||  |||| ||||| u
     acgcagc ggagcaccugccugg  uucg agcug aaggaauuccg caag aaggcugg   uguuccaaggug  ggacg  agca gguuc g
gaucg       a               au    u     -           u    c        aau            aa     aa    -     u
Get sequence
Deep sequencing
5091 reads, 4 experiments
Comments

miR820 was misnamed miR583 by Luo et al [1].

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr7: 13120534-13120734 [-]
intergenic
Clustered miRNAs
< 10kb from osa-MIR820b
osa-MIR820b Chr7: 13120534-13120734 [-]
osa-MIR172c Chr7: 13111485-13111595 [-]

Mature sequence osa-miR820b

Accession MIMAT0004080
Sequence

10 -  

ucggccucguggauggaccag

 - 30

Get sequence
Deep sequencing 2231 reads, 4 experiments
Evidence experimental; cloned [1], Northern [1-2], MPSS [2], Solexa [3]

References

1
PMID:16959252 "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development" Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH FEBS Lett. 580:5111-5116(2006).
2
PMID:18353984 "Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)" Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ Proc Natl Acad Sci U S A. 105:4951-4956(2008).
3
PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).