Stem-loop sequence osa-MIR818e

Accession

MI0005251 (change log)

Description

Oryza sativa miR818e stem-loop

Gene family

MIPF0000344; MIR818

Literature search

11 open access papers mention osa-MIR818e
(23 sentences)

Stem-loop

     -                                 c   cac               c         uuuuuuuuggaauuauuauuauuuuugacuuauuuuauuaucca 
5' cc ccguccuauaauauaagggauuuugaguuuuug uug   uguuugaccacucgu uuauuuaaa                                            a
   || ||||||||||||||||||||||||||||||||| |||   ||||||||||||||| |||||||||                                             
3' gg ggcaggguauuauauucccuaaaauucaaaaac aac   acaaacuggugagca aauaaguuu                                            a
     a                                 a   aua               a         uuuaaacauguuuauauuuuuugcuuuucaauacgaauuucaug 

Deep sequencing

3070 reads, 250 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

miR818 was misnamed miR580 by Luo et al [1].

Genome context

• Coordinates (MSU7): Chr7: 28154432-28154656 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005251

Mature sequence osa-miR818e

• Accession: MIMAT0004067
• Sequence: 201 - aaucccuuauauuaugggacgg - 222
• Deep sequencing: 1801 reads, 2 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS000038C249_39947

References

1. PMID:16959252 "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development" Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH FEBS Lett. 580:5111-5116(2006).