Stem-loop sequence osa-MIR818a

Accession MI0005247
Description Oryza sativa miR818a stem-loop
Gene family MIPF0000344; MIR818
Stem-loop 
     -  a                    -   aau            c    u         c      aa 
ucccu cc ucccauaguauaagggauuu ggg   gaugugacauau cuag auaaugaau uggaca  c
||||| || |||||||||||||||||||| |||   |||||||||||| |||| ||||||||| ||||||  c
aggga gg aggguauuauauucccuaaa cuc   cuacacugugua gauc uguuacuua accugu  g
     a  c                    a   -au            u    c         a      cu
Get sequence
Deep sequencing
9603 reads, 4 experiments
Comments

miR818 was misnamed miR580 by Luo et al [1].

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr1: 40415422-40415565 [+]
intergenic

Mature sequence osa-miR818a

Accession MIMAT0004063
Sequence

117 -  

aaucccuuauauuaugggacgg

 - 138

Get sequence
Deep sequencing 7564 reads, 3 experiments
Evidence experimental; cloned [1], Northern [1]

References

1
PMID:16959252 "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development" Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH FEBS Lett. 580:5111-5116(2006).