Stem-loop sequence osa-MIR814c

Accession

MI0005241 (change log)

Description

Oryza sativa miR814c stem-loop

Gene family

MIPF0000351; MIR814

Literature search

2 open access papers mention osa-MIR814c
(7 sentences)

Stem-loop

      ag   u       c      c              - g 
5' acc  aug gacacuu auagua aacgaaucuggaca g a
   |||  ||| ||||||| |||||| |||||||||||||| |  
3' ugg  uau cugugaa uaucau uugcuuaggccugu c a
      cu   c       a      a              a g 

Deep sequencing

938 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

miR814 was misnamed miR573 by Luo et al [1].

Genome context

• Coordinates (MSU7): Chr2: 10889672-10889754 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005241

Mature sequence osa-miR814c

• Accession: MIMAT0004057
• Sequence: 12 - cacuucauaguacaacgaaucu - 33
• Deep sequencing: 440 reads, 2 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS00005C1EF7_39947

References

1. PMID:16959252 "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development" Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH FEBS Lett. 580:5111-5116(2006).