Stem-loop sequence osa-MIR812b

Accession

MI0005234 (change log)

Description

Oryza sativa miR812b stem-loop

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812b
(15 sentences)

Stem-loop

       c   a    -                               --    aaagauuaaaaaaauagucacgcauaaaguaaua 
5' guau cgu ucua cguuugaccguucgucuuauuugaaaauuuu  auga                                  u
   |||| ||| |||| |||||||||||||||||||||||||||||||  ||||                                  u
3' caua gca aggu gcaaauuggcaggcagaauaaacuuuuaaaa  uacu                                  c
       a   c    u                               au    aaucauaaaaauaacaauaaucuacuauuuugua 

Deep sequencing

7594 reads, 1.65e+03 reads per million, 2 experiments

Confidence

Annotation confidence: low

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Comments

miR812 was misnamed miR569 by Luo et al [1].

Genome context

• Coordinates (MSU7): Chr2: 1936324-1936493 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005234

Mature sequence osa-miR812b

• Accession: MIMAT0004050
• Sequence: 141 - gacggacgguuaaacguuggac - 162
• Deep sequencing: 4980 reads, 2 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS00003701FC_39947

References

1. PMID:16959252 "Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development" Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH FEBS Lett. 580:5111-5116(2006).