Stem-loop sequence cel-mir-798

Accession MI0005199
Description Caenorhabditis elegans miR-798 stem-loop
Stem-loop 
       u  u  ag    -   a     u   a    u 
uacuguu ca gu  gugu uaa guuug aca gaag u
||||||| || ||  |||| ||| ||||| ||| |||| a
augacga gu ca  uaua auu cgaau ugu cuuu g
       -  -  gu    c   c     -   -    u
Get sequence
Deep sequencing
18 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
IV: 14277286-14277361 [-]
antisense
Y64G10A.6 ; Y64G10A.6; intron 1
Y64G10A.6 ; Y64G10A.6; intron 1
Y64G10A.6 ; Y64G10A.6; intron 1

Mature sequence cel-miR-798

Accession MIMAT0004233
Sequence

50 -  

uaagccuuacauauugacuga

 - 70

Get sequence
Deep sequencing 18 reads, 6 experiments
Evidence experimental; cloned [1], Solexa [2]
Validated targets
Predicted targets

References

1
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).