Stem-loop sequence cel-mir-792

Accession

MI0005193 (change log)

Description

Caenorhabditis elegans miR-792 stem-loop

Stem-loop

       ug uc              c  a     uag         a 
5' aagu  g  aacguuugagaguu aa agauu   caauuuuau c
   ||||  |  |||||||||||||| || |||||   |||||||||  
3' uuua  c  uugcagacuuucaa uu ucuaa   guuaaagug g
       gu uu              c  c     --a         a 

Deep sequencing

314 reads, 14.3 reads per million, 14 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrV: 3042092-3042181 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cel-mir-792

• cel-mir-1821: chrV: 3042530-3042633 [-]
• cel-mir-792: chrV: 3042092-3042181 [-]

Database links

• RNAcentral:URS00003E17FE_6239
• miRBase Tracker:MI0005193

Mature sequence cel-miR-792-5p

• Accession: MIMAT0020351
• Previous IDs: cel-miR-792*
• Sequence: 16 - ugagaguucaaaagauuuagcaauu - 40
• Deep sequencing: 10 reads, 7 experiments
• Evidence: experimental; Illumina [3]

Mature sequence cel-miR-792-3p

• Accession: MIMAT0004227
• Previous IDs: cel-miR-792
• Sequence: 55 - uugaaaucucuucaacuuucaga - 77
• Deep sequencing: 286 reads, 12 experiments
• Evidence: experimental; 454 [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS000038EAE8_6239
• Predicted targets:
  • TargetScanWorm:cel-miR-792
  • microrna.org:cel-miR-792-3p

References

1. PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2. PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
3. PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).