Stem-loop sequence cel-mir-784

Accession

MI0005184 (change log)

Description

Caenorhabditis elegans miR-784 stem-loop

Literature search

1 open access papers mention cel-mir-784
(6 sentences)

Stem-loop

   u   ac  -   c ug  a    c gc          -a   ca 
5'  ucg  gu cca g  gc caau u  guacguagaa  gau  a
    |||  || ||| |  || |||| |  ||||||||||  |||   
3'  agu  ca ggu c  cg guug a  cauguaucuu  cug  a
   a   ga  c   c gu  c    u aa          ca   aa 

Deep sequencing

2896 reads, 18.2 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrX: 8074922-8075009 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cel-mir-784

• cel-mir-5553: chrX: 8077555-8077664 [-]
• cel-mir-784: chrX: 8074922-8075009 [-]

Database links

• RNAcentral:URS000048DAE7_6239
• miRBase Tracker:MI0005184

Mature sequence cel-miR-784-5p

• Accession: MIMAT0004219
• Previous IDs: cel-miR-784
• Sequence: 14 - uggcacaaucugcguacguaga - 35
• Deep sequencing: 2885 reads, 11 experiments
• Evidence: experimental; 454 [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00002CB825_6239
• Predicted targets:
  • TargetScanWorm:cel-miR-784
  • microrna.org:cel-miR-784-5p

Mature sequence cel-miR-784-3p

• Accession: MIMAT0020347
• Previous IDs: cel-miR-784*
• Sequence: 55 - uauguacaaauguugcgcugcc - 76
• Deep sequencing: 10 reads, 6 experiments
• Evidence: experimental; Illumina [3]

References

1. PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2. PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
3. PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).