Stem-loop sequence sme-mir-125b

Accession MI0005161
Description Schmidtea mediterranea miR-125b stem-loop
Stem-loop 
-   a   au    cau c       c     a    u a a    a 
 gca guu  ucga   c cugagau auaau ugcc g g uuug a
 ||| |||  ||||   | ||||||| ||||| |||| | | ||||  
 cgu caa  aguu   g gacucug uauua augg c c aaac c
a   -   au    aau a       u     g    - - -    g
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Genome context
Coordinates (WUSTL3.1) Overlapping transcripts
Contig20519: 5873-5963 [+]
intergenic

Mature sequence sme-miR-125b-5p

Accession MIMAT0003998
Previous IDs sme-miR-125b
Sequence

16 -  

ucccugagaucauaauaugccu

 - 37

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Evidence experimental; cloned [1], Northern [1], 454 [2], Solexa [2]

Mature sequence sme-miR-125b-3p

Accession MIMAT0012114
Previous IDs sme-miR-125b*
Sequence

56 -  

gguagauuauugucucagaguaa

 - 78

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Evidence experimental; 454 [2], Solexa [2-3]

References

1
PMID:16849698 "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology" Palakodeti D, Smielewska M, Graveley BR RNA. 12:1640-1649(2006).
2
PMID:19564616 "High-resolution profiling and discovery of planarian small RNAs" Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N Proc Natl Acad Sci U S A. 106:11546-11551(2009).
3
PMID:19553344 "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea" Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR RNA. 15:1483-1491(2009).