Stem-loop sequence sme-mir-31b-1

Accession

MI0005146 (change log)

Previous IDs

sme-mir-31b

Description

Schmidtea mediterranea miR-31b-1 stem-loop

Gene family

MIPF0000064; mir-31

Literature search

1 open access papers mention sme-mir-31b-1
(1 sentences)

Stem-loop

          auga  a  c     g    c       a   acu 
5' auugaua    ca gg aagau cugg auagcug uaa   a
   |||||||    || || ||||| |||| ||||||| |||    
3' uaacuau    gu cc uucua gacu uaucgac auu   u
          auaa  c  u     g    -       c   auu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WUSTL3.1): Contig5733: 42326-42410 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005146

Mature sequence sme-miR-31b-5p

• Accession: MIMAT0003980
• Previous IDs: sme-miR-31b
• Sequence: 14 - aggcaagaugcuggcauagcuga - 36
• Evidence: experimental; Illumina [1-2], 454 [2]

Mature sequence sme-miR-31b-1-3p

• Accession: MIMAT0011413
• Previous IDs: sme-miR-31b-1*
• Sequence: 52 - cagcuauucaggaucuuucccu - 73
• Evidence: experimental; 454 [2], Illumina [2-3]

References

1. PMID:16849698 "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology" Palakodeti D, Smielewska M, Graveley BR RNA. 12:1640-1649(2006).
2. PMID:19564616 "High-resolution profiling and discovery of planarian small RNAs" Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N Proc Natl Acad Sci U S A. 106:11546-11551(2009).
3. PMID:19553344 "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea" Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR RNA. 15:1483-1491(2009).