Stem-loop sequence sme-mir-1a

AccessionMI0005128 (change log)
DescriptionSchmidtea mediterranea miR-1a stem-loop
Stem-loop
       a    u    ga            a  caa  g 
5' agcg gcau uuuc  ggcauuucauag gu   au a
   |||| |||| ||||  |||||||||||| ||   ||  
3' ucgu cgua aaag  cuguaagguguc ca   ua a
       a    u    ag            -  -aa  a 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (WUSTL3.1) Overlapping transcripts
Contig156: 220435-220508 [+]
intergenic
Database links

Mature sequence sme-miR-1a-5p

Accession MIMAT0012090
Previous IDssme-miR-1a*
Sequence

5 - 

agcauuuuucgaggcauuucau

 - 26

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Evidence experimental; 454 [2], Illumina [2-3]

Mature sequence sme-miR-1a-3p

Accession MIMAT0003960
Previous IDssme-miR-1a
Sequence

50 - 

uggaaugucgagaaauaugcau

 - 71

Get sequence
Evidence experimental; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1
PMID:16849698 "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology" Palakodeti D, Smielewska M, Graveley BR RNA. 12:1640-1649(2006).
2
PMID:19564616 "High-resolution profiling and discovery of planarian small RNAs" Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N Proc Natl Acad Sci U S A. 106:11546-11551(2009).
3
PMID:19553344 "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea" Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR RNA. 15:1483-1491(2009).