Stem-loop sequence sme-bantam-b

Accession MI0005120
Description Schmidtea mediterranea bantam-b stem-loop
Gene family MIPF0000153; bantam
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled bantam_microRNA. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

In molecular biology bantam microRNA is a short RNA molecule. MicroRNAs function to regulate the expression levels of other genes by several mechanisms.

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Stem-loop
--------     aaaac          u a          au 
        cuuua     cgguuuucgu g gaucuuagau  a
        |||||     |||||||||| | ||||||||||   
        gaagu     gucgaaagcg c cuagagucua  u
cuuucgcu     -auua          u a          cu 
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Genome context
Coordinates (WUSTL3.1) Overlapping transcripts
Contig362: 106656-106734 [-]
intergenic

Mature sequence sme-bantam-b-5p

Accession MIMAT0012085
Previous IDs sme-bantam-b*
Sequence

10 - 

ccgguuuucguugagaucuua

 - 30

Get sequence
Evidence experimental; 454 [2], Solexa [2-3]

Mature sequence sme-bantam-b-3p

Accession MIMAT0003950
Previous IDs sme-bantam-b
Sequence

43 - 

ugagaucacugcgaaagcugau

 - 64

Get sequence
Evidence experimental; cloned [1], Northern [1], Solexa [2]

References

1
PMID:16849698 "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology" Palakodeti D, Smielewska M, Graveley BR RNA. 12:1640-1649(2006).
2
PMID:19564616 "High-resolution profiling and discovery of planarian small RNAs" Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N Proc Natl Acad Sci U S A. 106:11546-11551(2009).
3
PMID:19553344 "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea" Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR RNA. 15:1483-1491(2009).