Stem-loop sequence osa-MIR395n

AccessionMI0005085 (change log)
DescriptionOryza sativa miR395n stem-loop
Gene family MIPF0000016; MIR395
Literature search

40 open access papers mention osa-MIR395n
(168 sentences)

Stem-loop
            u                c   auu 
5' gaguucccu caagcacuucacgacg acu   u
   ||||||||| |||||||||||||||| |||    
3' cucaagggg guuugugaaguguugu uga   a
            -                -   gag 
Get sequence
Deep sequencing
46 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Comments

Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the gene names have been rationalised to reflect this arrangement [1].

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr4: 32622243-32622308 [+]
intergenic
Clustered miRNAs
< 10kb from osa-MIR395n
osa-MIR395mChr4: 32621993-32622112 [+]
osa-MIR395nChr4: 32622243-32622308 [+]
osa-MIR395oChr4: 32622381-32622449 [+]
osa-MIR395pChr4: 32622525-32622592 [+]
osa-MIR395qChr4: 32622668-32622735 [+]
osa-MIR395rChr4: 32622811-32622878 [+]
osa-MIR395sChr4: 32622943-32623028 [+]
osa-MIR395xChr4: 32623067-32623162 [+]
Database links

Mature sequence osa-miR395n

Accession MIMAT0003871
Sequence

46 - 

gugaaguguuugggggaacuc

 - 66

Get sequence
Deep sequencing36 reads, 2 experiments
Evidence by similarity; MI0001007
Database links

References

1
PMID:16117853 "Molecular evolution of the rice miR395 gene family" Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L Cell Res. 15:631-638(2005).