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miRBase |
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Stem-loop sequence bta-mir-193a |
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Accession | MI0005014 (change log) | ||||
Description | Bos taurus miR-193a stem-loop | ||||
Gene family | MIPF0000082; mir-193 | ||||
Literature search |
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12 open access papers mention bta-mir-193a | ||||
Stem-loop |
u a ag u cg g a ggu 5' ggg gcugag cuggg cuuug ggc ag ugaa g ||| |||||| ||||| ||||| ||| || |||| 3' ccc cggcuc gaccc gaaac ccg uc acuu u c - cu u au g a ggc |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
High-throughput sequencing suggests that the dominant miRNA arises from the 5' arm of this precursor [2], in contrast to earlier cloning studies. |
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Genome context |
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Database links |
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Mature sequence bta-miR-193a-5p |
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Accession | MIMAT0003794 |
Previous IDs | bta-miR-193a* |
Sequence |
15 - ugggucuuugcgggcgagauga - 36 |
Deep sequencing | 6872 reads, 64 experiments |
Evidence | experimental; cloned [1], Illumina [2] |
Predicted targets |
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Mature sequence bta-miR-193a-3p |
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Accession | MIMAT0003795 |
Previous IDs | bta-miR-193a |
Sequence |
49 - aacuggccuacaaagucccagu - 70 |
Deep sequencing | 10421 reads, 72 experiments |
Evidence | experimental; cloned [1], Illumina [2] |
Predicted targets |
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References |
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1 |
PMID:17105755
"Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues"
Physiol Genomics. 29:35-43(2007).
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2 |
PMID:19633723
"Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection"
PLoS One. 4:e6349(2009).
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