Stem-loop sequence bta-mir-10a

Accession

MI0005007 (change log)

Description

Bos taurus miR-10a stem-loop

Gene family

MIPF0000033; mir-10

Literature search

14 open access papers mention bta-mir-10a
(35 sentences)

Stem-loop

   ----gauc   --c    uu        a    g     c          uaaggaa 
5'         ugu   uguc  cuguauau cccu uagau cgaauuugug       u
           |||   ||||  |||||||| |||| ||||| ||||||||||        
3'         aca   acag  gauguaua gggg aucua gcuuaaacac       u
   cucgccuc   aau    uu        a    -     u          uaguguu 

Deep sequencing

6635780 reads, 7.09e+04 reads per million, 74 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr19: 38713901-38714009 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-10a

• bta-mir-2886: chr19: 38707493-38707567 [+]
• bta-mir-10a: chr19: 38713901-38714009 [+]

Database links

• EntrezGene:MIR10A
• RNAcentral:URS000075CF25_9913
• miRBase Tracker:MI0005007

Mature sequence bta-miR-10a

• Accession: MIMAT0003786
• Sequence: 22 - uacccuguagauccgaauuugug - 44
• Deep sequencing: 6634576 reads, 74 experiments
• Evidence: experimental; cloned [1], Array [2], qRT-PCR [2]
• Predicted targets:
  • TargetScanVert:bta-miR-10a

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).
2. PMID:19170227 "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach" Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M Mol Reprod Dev. 76:665-677(2009).