Stem-loop sequence mmu-mir-676

Accession

MI0005003

Symbol

MGI:Mir676

Description

Mus musculus miR-676 stem-loop

Gene family

MIPF0000471; mir-676

Stem-loop

cuuu    --        ga   u             uu   gaauu 
    gccu  gaaugcau  cuc acaaccuuaggac  gca     a
    ||||  ||||||||  ||| |||||||||||||  |||      
    cggg  uuugcgug  gag uguuggaguccug  cgu     a
----    uc        uc   u             -c   aagga 

Deep sequencing

15519 reads, 79 experiments

Genome context

• Coordinates (GRCm38): chrX: 100381097-100381185 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000044402 ; Eda-011; intron 2

  OTTMUST00000043781 ; Eda-006; intron 2

  OTTMUST00000043780 ; Eda-005; intron 2

  OTTMUST00000043779 ; Eda-004; intron 2

  OTTMUST00000043778 ; Eda-003; intron 2

  OTTMUST00000043584 ; Eda-002; intron 2

  OTTMUST00000043583 ; Eda-001; intron 2

  ENSMUST00000113777 ; Eda-202; intron 2

  ENSMUST00000071453 ; Eda-201; intron 2

  ENSMUST00000113783 ; Eda-011; intron 2

  ENSMUST00000113781 ; Eda-006; intron 2

  ENSMUST00000113778 ; Eda-005; intron 2

  ENSMUST00000113780 ; Eda-004; intron 2

  ENSMUST00000113775 ; Eda-003; intron 2

  ENSMUST00000113776 ; Eda-002; intron 2

  ENSMUST00000113779 ; Eda-001; intron 2

Database links

• ENTREZGENE: 751534;Mir676
• MGI: 3629957;Mir676

Mature sequence mmu-miR-676-5p

• Accession: MIMAT0003781
• Previous IDs: mmu-miR-676*
• Sequence: 18 - acucuacaaccuuaggacuugc - 39
• Deep sequencing: 2582 reads, 63 experiments
• Evidence: experimental; MPSS [1], Solexa [3-4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-676-5p
  • MICRORNA.ORG:mmu-miR-676-5p
  • MIRDB:mmu-miR-676-5p
  • RNA22-MMU:mmu-miR-676-5p

Mature sequence mmu-miR-676-3p

• Accession: MIMAT0003782
• Previous IDs: mmu-miR-676
• Sequence: 55 - ccguccugagguuguugagcu - 75
• Deep sequencing: 12929 reads, 77 experiments
• Evidence: experimental; MPSS [1], cloned [2], Solexa [3-4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-676-3p
  • MICRORNA.ORG:mmu-miR-676-3p
  • MIRDB:mmu-miR-676-3p
  • RNA22-MMU:mmu-miR-676-3p
  • TARGETSCAN-VERT:mmu-miR-676

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).