Stem-loop sequence dre-mir-724

Accession

MI0004768 (change log)

Description

Danio rerio miR-724 stem-loop

Gene family

MIPF0001616; mir-724

Literature search

3 open access papers mention dre-mir-724
(6 sentences)

Stem-loop

         a u      -        uu  c a     agu ag 
5' cagcag c ggauuu aaagggaa  ug g cuguu   c  a
   |||||| | |||||| ||||||||  || | |||||   |   
3' gucguc g ucuaga uuuuccuu  ac c gacaa   g  u
         c u      a        cc  a c     gau uu 

Deep sequencing

1915 reads, 72.7 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr11: 3176686-3176770 [+]
• Overlapping transcripts:

  sense

  OTTDART00000028834 ; cpne5-001; intron 11

  ENSDART00000050098 ; cpne5-001; intron 11

  ENSDART00000126071 ; cpne5-202; intron 17

  ENSDART00000104503 ; cpne5-201; intron 18

Database links

• EntrezGene:mir724
• EntrezGene:mir724
• RNAcentral:URS000075ABF9_7955
• miRBase Tracker:MI0004768

Mature sequence dre-miR-724

• Accession: MIMAT0003752
• Sequence: 14 - uuaaagggaauuugcgacuguu - 35
• Deep sequencing: 1885 reads, 11 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Database links:
  • RNAcentral:URS000075D284_7955
• Predicted targets:
  • TargetScanFish:dre-miR-724

References

1. PMID:16698962 "Cloning and expression of new microRNAs from zebrafish" Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH Nucleic Acids Res. 34:2558-2569(2006).