Stem-loop sequence ppt-MIR533b

Accession MI0004724
Description Physcomitrella patens miR533b stem-loop
Gene family MIPF0000356; MIR533
Stem-loop 
      -cc               c             -    a  c          gac  u 
ggagga   gauauggagagcugu caggcugugaggg gagc cu guauucuuuu   cu u
||||||   ||||||||||||||| ||||||||||||| |||| || ||||||||||   || g
ucuccu   cuaugucucucgaca gucugacacuccc cucg ga cauaagggag   ga c
      ucu               u             u    c  -          -aa  u
Get sequence
Deep sequencing
6859 reads, 3 experiments
Comments

Axtell et al. show that mature products from both arms are significantly expressed [3], named here miR533b-5p and miR533b-3p.

Genome context
Coordinates (JGI1.1) Overlapping transcripts
scaffold_31: 1002600-1002724 [-]
intergenic

Mature sequence ppt-miR533b-5p

Accession MIMAT0003914
Previous IDs ppt-miR533b
Sequence

17 -  

gagcuguccaggcugugaggg

 - 37

Get sequence
Deep sequencing 222 reads, 3 experiments
Evidence experimental; cloned [3]

Mature sequence ppt-miR533b-3p

Accession MIMAT0004833
Sequence

90 -  

cucacagucuguacagcucuc

 - 110

Get sequence
Deep sequencing 6637 reads, 3 experiments
Evidence experimental; 454 [3]

References

1
PMID:16824179 "Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss" Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T Plant J. 47:25-37(2006).
2
PMID:17359535 "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution" Fattash I, Voss B, Reski R, Hess WR, Frank W BMC Plant Biol. 7:13(2007).
3
PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).