Stem-loop sequence ppt-MIR1218

Accession MI0004717
Description Physcomitrella patens miR1218 stem-loop
Stem-loop 
   u    aca   g   u      c   c              cu     -  -gaa        ag u 
cag gauu   ugu ucg gguagg auc uuagagucguaggc  cugug ug    uucaagau  u c
||| ||||   ||| ||| |||||| ||| ||||||||||||||  ||||| ||    ||||||||  | a
guc uuaa   aca ggc cuaucc uag agucucagcauccg  gacac ac    aaguuuug  g c
   u    ---   g   u      a   a              ag     u  acac        cu a
Get sequence
Deep sequencing
1906 reads, 3 experiments
Genome context
Coordinates (JGI1.1) Overlapping transcripts
scaffold_101: 629067-629204 [+]
intergenic

Mature sequence ppt-miR1218

Accession MIMAT0003907
Sequence

29 -  

ccuuagagucguaggccucug

 - 49

Get sequence
Deep sequencing 1654 reads, 3 experiments
Evidence experimental; Northern [1], cloned [2], 454 [3]

References

1
PMID:16824179 "Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss" Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T Plant J. 47:25-37(2006).
2
PMID:17359535 "Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution" Fattash I, Voss B, Reski R, Hess WR, Frank W BMC Plant Biol. 7:13(2007).
3
PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).