Stem-loop sequence ppt-MIR1217

Accession MI0004716
Description Physcomitrella patens miR1217 stem-loop
Stem-loop 
   ug      g   au    gu        g     gg     c   u -   g 
ucc  uuucug uug  cuug  aucauguu caaau  caaaa cug g acc g
|||  |||||| |||  ||||  |||||||| |||||  ||||| ||| | ||| a
agg  gaaggc aac  gaac  uaguacga guuua  guuuu gac c ugg a
   uu      -   au    ug        a     aa     u   u a   u
Get sequence
Deep sequencing
1221 reads, 3 experiments
Genome context
Coordinates (JGI1.1) Overlapping transcripts
scaffold_100: 542222-542332 [+]
intergenic

Mature sequence ppt-miR1217-5p

Accession MIMAT0004830
Sequence

20 -  

ugguaucauguugcaaauggc

 - 40

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Deep sequencing 818 reads, 3 experiments
Evidence experimental; 454 [2]

Mature sequence ppt-miR1217-3p

Accession MIMAT0003906
Previous IDs ppt-miR1217
Sequence

75 -  

aauuugaagcaugaugucaag

 - 95

Get sequence
Deep sequencing 401 reads, 3 experiments
Evidence experimental; Northern [1], 454 [2]

References

1
PMID:16824179 "Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss" Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T Plant J. 47:25-37(2006).
2
PMID:17601824 "Common functions for diverse small RNAs of land plants" Axtell MJ, Snyder JA, Bartel DP Plant Cell. 19:1750-1769(2007).