Stem-loop sequence mmu-mir-297b

Accession MI0004674
Symbol MGI:Mir297b
Description Mus musculus miR-297b stem-loop
Gene family MIPF0000204; mir-297
Stem-loop 
       gc        --a         g  c   aac      a    a   u 
ucuauuu  uugugugu   uauguaugu ug aug   augugu uaug aua a
|||||||  ||||||||   ||||||||| || |||   |||||| |||| |||  
agguaaa  gacacaca   auacguaca ac uac   uacaca auac uau c
       -a        aac         a  a   cca      c    a   a
Get sequence
Deep sequencing
5789 reads, 85 experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chr2: 10511667-10511775 [+]
sense
OTTMUST00000026263 ; Sfmbt2-001; intron 10
ENSMUST00000041105 ; Sfmbt2-001; intron 10
ENSMUST00000116594 ; Sfmbt2-201; intron 11
Clustered miRNAs
< 10kb from mmu-mir-297b
mmu-mir-467a-10 chr2: 10503273-10503355 [+]
mmu-mir-466b-3 chr2: 10503565-10503645 [+]
mmu-mir-669a-12 chr2: 10503791-10503877 [+]
mmu-mir-467e chr2: 10505721-10505807 [+]
mmu-mir-466p chr2: 10506006-10506094 [+]
mmu-mir-467d chr2: 10507630-10507714 [+]
mmu-mir-466a chr2: 10507918-10507990 [+]
mmu-mir-297c chr2: 10509016-10509113 [+]
mmu-mir-669c chr2: 10509296-10509404 [+]
mmu-mir-669a-2 chr2: 10510164-10510260 [+]
mmu-mir-297b chr2: 10511667-10511775 [+]
mmu-mir-466d chr2: 10511967-10512062 [+]
mmu-mir-669m-1 chr2: 10512790-10512887 [+]
mmu-mir-669m-2 chr2: 10513434-10513531 [+]
mmu-mir-466n chr2: 10513741-10513834 [+]
mmu-mir-669o chr2: 10514300-10514395 [+]
mmu-mir-466g chr2: 10514595-10514674 [+]
mmu-mir-466h chr2: 10514891-10514971 [+]
mmu-mir-297a-3 chr2: 10515820-10515921 [+]
mmu-mir-466l chr2: 10516097-10516217 [+]
mmu-mir-297a-4 chr2: 10517067-10517164 [+]
mmu-mir-669i chr2: 10517604-10517730 [+]
mmu-mir-669h chr2: 10518155-10518279 [+]
Database links

Mature sequence mmu-miR-297b-5p

Accession MIMAT0003480
Previous IDs mmu-miR-297b
Sequence

20 -  

auguaugugugcaugaacaugu

 - 41

Get sequence
Deep sequencing 2048 reads, 64 experiments
Evidence experimental; MPSS [1], Solexa [3-4]
Predicted targets

Mature sequence mmu-miR-297b-3p

Accession MIMAT0004827
Sequence

57 -  

uauacauacacacauacccaua

 - 78

Get sequence
Deep sequencing 3708 reads, 60 experiments
Evidence experimental; cloned [2], Solexa [3-4]
Predicted targets

References

1
PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).