Stem-loop sequence mmu-mir-669c

Accession

MI0004673

Symbol

MGI:Mir669c

Description

Mus musculus miR-669c stem-loop

Gene family

MIPF0000316; mir-467

Stem-loop

   --cca   a       g     a  g         ga         -   cau 
ccu     ugu ugugcau ugugu ua uugugugug  uguguguau uug   a
|||     ||| ||||||| ||||| || |||||||||  ||||||||| |||    
gga     aca acacgug acaca au aacacacac  acacacaua aau   u
   cacag   a       a     a  g         --         c   aaa 

Deep sequencing

245152 reads, 86 experiments

Genome context

• Coordinates (GRCm38): chr2: 10509296-10509404 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-669c

• mmu-mir-669a-11: chr2: 10501339-10501425 [+]
• mmu-mir-467a-10: chr2: 10503273-10503355 [+]
• mmu-mir-466b-3: chr2: 10503565-10503645 [+]
• mmu-mir-669a-12: chr2: 10503791-10503877 [+]
• mmu-mir-467e: chr2: 10505721-10505807 [+]
• mmu-mir-466p: chr2: 10506006-10506094 [+]
• mmu-mir-467d: chr2: 10507630-10507714 [+]
• mmu-mir-466a: chr2: 10507918-10507990 [+]
• mmu-mir-297c: chr2: 10509016-10509113 [+]
• mmu-mir-669c: chr2: 10509296-10509404 [+]
• mmu-mir-669a-2: chr2: 10510164-10510260 [+]
• mmu-mir-297b: chr2: 10511667-10511775 [+]
• mmu-mir-466d: chr2: 10511967-10512062 [+]
• mmu-mir-669m-1: chr2: 10512790-10512887 [+]
• mmu-mir-669m-2: chr2: 10513434-10513531 [+]
• mmu-mir-466n: chr2: 10513741-10513834 [+]
• mmu-mir-669o: chr2: 10514300-10514395 [+]
• mmu-mir-466g: chr2: 10514595-10514674 [+]
• mmu-mir-466h: chr2: 10514891-10514971 [+]
• mmu-mir-297a-3: chr2: 10515820-10515921 [+]
• mmu-mir-466l: chr2: 10516097-10516217 [+]
• mmu-mir-297a-4: chr2: 10517067-10517164 [+]
• mmu-mir-669i: chr2: 10517604-10517730 [+]
• mmu-mir-669h: chr2: 10518155-10518279 [+]

Database links

• ENTREZGENE: 735273;Mir669c
• MGI: 3629619;Mir669c

Mature sequence mmu-miR-669c-5p

• Accession: MIMAT0003479
• Previous IDs: mmu-miR-669c
• Sequence: 24 - auaguuguguguggaugugugu - 45
• Deep sequencing: 244832 reads, 79 experiments
• Evidence: experimental; MPSS [1], cloned [2], Solexa [3-4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-669c-5p
  • MICRORNA.ORG:mmu-miR-669c-5p
  • MIRDB:mmu-miR-669c-5p
  • RNA22-MMU:mmu-miR-669c-5p
  • TARGETSCAN-VERT:mmu-miR-669c

Mature sequence mmu-miR-669c-3p

• Accession: MIMAT0017253
• Previous IDs: mmu-miR-669c*
• Sequence: 64 - uacacacacacacacaaguaaa - 85
• Deep sequencing: 207 reads, 51 experiments
• Evidence: experimental; Solexa [4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-669c-3p
  • MIRDB:mmu-miR-669c-3p
  • RNA22-MMU:mmu-miR-669c-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).