Stem-loop sequence mmu-mir-669a-3

Accession MI0004668
Symbol MGI:Mir669a-3
Description Mus musculus miR-669a-3 stem-loop
Gene family MIPF0000316; mir-467
Stem-loop 
uuccucca    --     a     g    gu        c     c    c   au 
        ugua  ugugc ugugu uaua  ugugugug auguu augu uau  u
        ||||  ||||| ||||| ||||  |||||||| ||||| |||| |||   
        acau  acacg acgca auau  acacacac uacaa uaca aua  u
----agac    ac     a     a    gu        a     -    u   ag
Get sequence
Deep sequencing
11512 reads, 81 experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chr2: 10474433-10474541 [+]
sense
OTTMUST00000026263 ; Sfmbt2-001; intron 10
ENSMUST00000041105 ; Sfmbt2-001; intron 10
ENSMUST00000116594 ; Sfmbt2-201; intron 11
Clustered miRNAs
< 10kb from mmu-mir-669a-3
mmu-mir-466m chr2: 10466663-10466746 [+]
mmu-mir-466f-1 chr2: 10466944-10467037 [+]
mmu-mir-669f chr2: 10467229-10467349 [+]
mmu-mir-669e chr2: 10467495-10467613 [+]
mmu-mir-669b chr2: 10467790-10467886 [+]
mmu-mir-669d chr2: 10468343-10468463 [+]
mmu-mir-466f-2 chr2: 10468675-10468768 [+]
mmu-mir-669l chr2: 10468971-10469068 [+]
mmu-mir-669d-2 chr2: 10471644-10471729 [+]
mmu-mir-466f-3 chr2: 10471953-10472046 [+]
mmu-mir-297a-2 chr2: 10472254-10472343 [+]
mmu-mir-466o chr2: 10472540-10472623 [+]
mmu-mir-467c chr2: 10473931-10474027 [+]
mmu-mir-466b-1 chr2: 10474219-10474300 [+]
mmu-mir-669a-3 chr2: 10474433-10474541 [+]
mmu-mir-669k chr2: 10475300-10475426 [+]
mmu-mir-467a-1 chr2: 10476346-10476418 [+]
mmu-mir-466b-8 chr2: 10476628-10476713 [+]
mmu-mir-669a-1 chr2: 10476853-10476949 [+]
mmu-mir-669g chr2: 10477150-10477272 [+]
mmu-mir-669j chr2: 10477910-10478030 [+]
mmu-mir-467a-2 chr2: 10478798-10478880 [+]
mmu-mir-466e chr2: 10479088-10479171 [+]
mmu-mir-669a-4 chr2: 10479315-10479401 [+]
mmu-mir-467b chr2: 10481248-10481320 [+]
mmu-mir-466c-1 chr2: 10481534-10481617 [+]
mmu-mir-669a-5 chr2: 10481761-10481847 [+]
mmu-mir-467a-3 chr2: 10483678-10483760 [+]
mmu-mir-466c-2 chr2: 10483966-10484055 [+]
mmu-mir-669a-6 chr2: 10484196-10484282 [+]
Database links

Mature sequence mmu-miR-669a-5p

Accession MIMAT0003477
Previous IDs mmu-miR-669a
Sequence

28 -  

aguugugugugcauguucaugucu

 - 51

Get sequence
Deep sequencing 90605 reads, 72 experiments
Evidence experimental; MPSS [1], Solexa [2-3]
Predicted targets

Mature sequence mmu-miR-669a-3-3p

Accession MIMAT0017251
Sequence

64 -  

acauaacauacacacacauguau

 - 86

Get sequence
Deep sequencing 3708 reads, 61 experiments
Evidence experimental; Solexa [3]
Predicted targets

References

1
PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).