Stem-loop sequence mmu-mir-669a-2

Accession MI0004667
Symbol MGI:Mir669a-2
Description Mus musculus miR-669a-2 stem-loop
Gene family MIPF0000316; mir-467
Stem-loop 
ca   a     a     g    gu        c     c    c   au 
  ugu ugugc ugugu uaua  ugugugug auguu augu uau  u
  ||| ||||| ||||| ||||  |||||||| ||||| |||| |||   
  aca acacg acgca auau  acacacac uacaa uaca aua  u
--   c     a     a    gc        a     -    u   ag
Get sequence
Deep sequencing
11538 reads, 82 experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chr2: 10510164-10510260 [+]
sense
OTTMUST00000026263 ; Sfmbt2-001; intron 10
ENSMUST00000041105 ; Sfmbt2-001; intron 10
ENSMUST00000116594 ; Sfmbt2-201; intron 11
Clustered miRNAs
< 10kb from mmu-mir-669a-2
mmu-mir-669a-11 chr2: 10501339-10501425 [+]
mmu-mir-467a-10 chr2: 10503273-10503355 [+]
mmu-mir-466b-3 chr2: 10503565-10503645 [+]
mmu-mir-669a-12 chr2: 10503791-10503877 [+]
mmu-mir-467e chr2: 10505721-10505807 [+]
mmu-mir-466p chr2: 10506006-10506094 [+]
mmu-mir-467d chr2: 10507630-10507714 [+]
mmu-mir-466a chr2: 10507918-10507990 [+]
mmu-mir-297c chr2: 10509016-10509113 [+]
mmu-mir-669c chr2: 10509296-10509404 [+]
mmu-mir-669a-2 chr2: 10510164-10510260 [+]
mmu-mir-297b chr2: 10511667-10511775 [+]
mmu-mir-466d chr2: 10511967-10512062 [+]
mmu-mir-669m-1 chr2: 10512790-10512887 [+]
mmu-mir-669m-2 chr2: 10513434-10513531 [+]
mmu-mir-466n chr2: 10513741-10513834 [+]
mmu-mir-669o chr2: 10514300-10514395 [+]
mmu-mir-466g chr2: 10514595-10514674 [+]
mmu-mir-466h chr2: 10514891-10514971 [+]
mmu-mir-297a-3 chr2: 10515820-10515921 [+]
mmu-mir-466l chr2: 10516097-10516217 [+]
mmu-mir-297a-4 chr2: 10517067-10517164 [+]
mmu-mir-669i chr2: 10517604-10517730 [+]
mmu-mir-669h chr2: 10518155-10518279 [+]
Database links

Mature sequence mmu-miR-669a-5p

Accession MIMAT0003477
Previous IDs mmu-miR-669a
Sequence

22 -  

aguugugugugcauguucaugucu

 - 45

Get sequence
Deep sequencing 90605 reads, 72 experiments
Evidence experimental; MPSS [1], Solexa [2-3]
Predicted targets

Mature sequence mmu-miR-669a-3p

Accession MIMAT0017243
Sequence

58 -  

acauaacauacacacacacguau

 - 80

Get sequence
Deep sequencing 41656 reads, 75 experiments
Evidence experimental; Solexa [3]
Predicted targets

References

1
PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).