Stem-loop sequence mmu-mir-495

Accession

MI0004639

Symbol

MGI:Mir495

Description

Mus musculus miR-495 stem-loop

Gene family

MIPF0000110; mir-329

Stem-loop

a       u  -       --a   u    uuu 
 aagaagu gc ccauguu   uuu ucgc   u
 ||||||| || |||||||   ||| ||||    
 uucuuca cg gguacaa   aag agug   a
-       -  u       aca   c    uuu 

Deep sequencing

16903 reads, 62 experiments

Genome context

• Coordinates (GRCm38): chr12: 109718754-109718816 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000093597 ; Mir495-201; exon 1

Clustered miRNAs

< 10kb from mmu-mir-495

• mmu-mir-379: chr12: 109709060-109709125 [+]
• mmu-mir-411: chr12: 109710175-109710256 [+]
• mmu-mir-299a: chr12: 109710638-109710700 [+]
• mmu-mir-299b: chr12: 109710645-109710693 [-]
• mmu-mir-380: chr12: 109711803-109711863 [+]
• mmu-mir-1197: chr12: 109712317-109712436 [+]
• mmu-mir-323: chr12: 109712508-109712593 [+]
• mmu-mir-758: chr12: 109712810-109712890 [+]
• mmu-mir-329: chr12: 109713481-109713577 [+]
• mmu-mir-494: chr12: 109715318-109715402 [+]
• mmu-mir-679: chr12: 109715577-109715650 [+]
• mmu-mir-1193: chr12: 109715671-109715791 [+]
• mmu-mir-666: chr12: 109717085-109717183 [+]
• mmu-mir-543: chr12: 109717258-109717333 [+]
• mmu-mir-495: chr12: 109718754-109718816 [+]
• mmu-mir-667: chr12: 109720006-109720097 [+]
• mmu-mir-376c: chr12: 109722718-109722803 [+]
• mmu-mir-654: chr12: 109723218-109723301 [+]
• mmu-mir-376b: chr12: 109723458-109723539 [+]
• mmu-mir-376a: chr12: 109723781-109723848 [+]
• mmu-mir-300: chr12: 109724313-109724391 [+]
• mmu-mir-381: chr12: 109726822-109726896 [+]
• mmu-mir-487b: chr12: 109727333-109727414 [+]
• mmu-mir-539: chr12: 109728129-109728202 [+]

Database links

• ENTREZGENE: 751522;Mir495
• MGI: 3629903;Mir495

Mature sequence mmu-miR-495-5p

• Accession: MIMAT0017249
• Previous IDs: mmu-miR-495*
• Sequence: 4 - gaaguugcccauguuauuuuucg - 26
• Deep sequencing: 354 reads, 28 experiments
• Evidence: experimental; Solexa [4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-495-5p
  • MIRDB:mmu-miR-495-5p
  • RNA22-MMU:mmu-miR-495-5p

Mature sequence mmu-miR-495-3p

• Accession: MIMAT0003456
• Previous IDs: mmu-miR-495
• Sequence: 42 - aaacaaacauggugcacuucuu - 63
• Deep sequencing: 16545 reads, 59 experiments
• Evidence: experimental; MPSS [1], cloned [2], Solexa [3-4]
• Validated targets:
  • TARBASE:mmu-miR-495-3p
• Predicted targets:
  • DIANA-MICROT:mmu-miR-495-3p
  • MICRORNA.ORG:mmu-miR-495-3p
  • MIRDB:mmu-miR-495-3p
  • RNA22-MMU:mmu-miR-495-3p
  • TARGETSCAN-VERT:mmu-miR-495

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).