Stem-loop sequence mmu-mir-666

Accession MI0004553
Symbol MGI:Mir666
Description Mus musculus miR-666 stem-loop
Gene family MIPF0000782; mir-666
Stem-loop 
   -au  --ug    c   -        --a  -     gag      -  ag 
cug   uc    ccug gug gagcgggc   ca gcugu   agcccc cu  g
|||   ||    |||| ||| ||||||||   || |||||   |||||| ||   
gac   ag    ggac cgc cucguccg   gu cgacg   ucgggg ga  u
   agc  ugaa    a   a        cua  g     ---      c  ca
Get sequence
Deep sequencing
8191 reads, 56 experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chr12: 109717085-109717183 [+]
intergenic
Clustered miRNAs
< 10kb from mmu-mir-666
mmu-mir-379 chr12: 109709060-109709125 [+]
mmu-mir-411 chr12: 109710175-109710256 [+]
mmu-mir-299a chr12: 109710638-109710700 [+]
mmu-mir-299b chr12: 109710645-109710693 [-]
mmu-mir-380 chr12: 109711803-109711863 [+]
mmu-mir-1197 chr12: 109712317-109712436 [+]
mmu-mir-323 chr12: 109712508-109712593 [+]
mmu-mir-758 chr12: 109712810-109712890 [+]
mmu-mir-329 chr12: 109713481-109713577 [+]
mmu-mir-494 chr12: 109715318-109715402 [+]
mmu-mir-679 chr12: 109715577-109715650 [+]
mmu-mir-1193 chr12: 109715671-109715791 [+]
mmu-mir-666 chr12: 109717085-109717183 [+]
mmu-mir-543 chr12: 109717258-109717333 [+]
mmu-mir-495 chr12: 109718754-109718816 [+]
mmu-mir-667 chr12: 109720006-109720097 [+]
mmu-mir-376c chr12: 109722718-109722803 [+]
mmu-mir-654 chr12: 109723218-109723301 [+]
mmu-mir-376b chr12: 109723458-109723539 [+]
mmu-mir-376a chr12: 109723781-109723848 [+]
mmu-mir-300 chr12: 109724313-109724391 [+]
mmu-mir-381 chr12: 109726822-109726896 [+]
Database links

Mature sequence mmu-miR-666-5p

Accession MIMAT0003737
Previous IDs mmu-miR-666
Sequence

19 -  

agcgggcacagcugugagagcc

 - 40

Get sequence
Deep sequencing 5690 reads, 51 experiments
Evidence experimental; MPSS [1], cloned [2-3], Solexa [4-5]
Predicted targets

Mature sequence mmu-miR-666-3p

Accession MIMAT0004823
Sequence

56 -  

ggcugcagcgugaucgccugcu

 - 77

Get sequence
Deep sequencing 2494 reads, 39 experiments
Evidence experimental; cloned [3], Solexa [4-5]
Predicted targets

References

1
PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2
PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
3
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).