Stem-loop sequence mmu-mir-770

Accession

MI0004203 (change log)

Symbol

MGI:Mir770

Description

Mus musculus miR-770 stem-loop

Gene family

MIPF0000355; mir-770

Literature search

7 open access papers mention mmu-mir-770
(104 sentences)

Stem-loop

       ----c        c       a      gucu  g       a    
5' gcca     cuucugug ccccagc ccacgu    gg ccacgug gca 
   ||||     |||||||| ||||||| ||||||    || ||||||| || a
3' cggu     ggggacgc ggggucg ggugca    cc ggugcac cgc 
       agucu        c       a      --gu  g       -    

Deep sequencing

57804 reads, 39 reads per million, 59 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 109563692-109563785 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000055474 ; Meg3-006; intron 4

  OTTMUST00000055469 ; Meg3-001; exon 5

  OTTMUST00000055471 ; Meg3-003; intron 9

  ENSMUST00000143847 ; Meg3-006; intron 4

  ENSMUST00000166636 ; Meg3-201; intron 4

  ENSMUST00000146701 ; Meg3-001; exon 5

  ENSMUST00000143836 ; Meg3-003; intron 9

Clustered miRNAs

< 10kb from mmu-mir-770

• mmu-mir-770: chr12: 109563692-109563785 [+]
• mmu-mir-673: chr12: 109571990-109572080 [+]

Database links

• EntrezGene:Mir770
• MGI:Mir770
• RNAcentral:URS000075A093_10090
• miRBase Tracker:MI0004203

Mature sequence mmu-miR-770-5p

• Accession: MIMAT0004822
• Sequence: 19 - agcaccacgugucugggccacg - 40
• Deep sequencing: 4936 reads, 35 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000006FAEF_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-770-5p
  • miRDB:mmu-miR-770-5p
  • microrna.org:mmu-miR-770-5p

Mature sequence mmu-miR-770-3p

• Accession: MIMAT0003891
• Sequence: 53 - cgugggccugacguggagcugg - 74
• Deep sequencing: 52860 reads, 56 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00001EFDE0_10090
• Predicted targets:
  • miRDB:mmu-miR-770-3p
  • microrna.org:mmu-miR-770-3p

References

1. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).