Stem-loop sequence hsa-mir-670

Accession MI0003933
Description Homo sapiens miR-670 stem-loop
Gene family MIPF0000734; mir-670
Stem-loop 
  uu     ug ac      uc        u     - ug    ug au 
gu  agggg  g  cugaug  ccugagug augug g  aacc  a  u
||  |||||  |  ||||||  |||||||| ||||| |  ||||  |  u
ca  ucccc  u  gacugu  ggacuuac uauac c  uugg  u  g
  cu     gu --      ga        u     u cu    gu cc
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Deep sequencing
1 reads, 1 experiments
Comments

Berezikov et al. proposed this sequence as a miRNA candidate based on the RAKE method [1]. Artzi et al. later showed that it is a homolog of a validated miRNA in mouse [2].

Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr11: 43581206-43581303 [+]
sense
OTTHUMT00000337474 ; AC023085.1-001; intron 1
OTTHUMT00000337474 ; AC023085.1-001; intron 1
OTTHUMT00000337474 ; AC023085.1-001; intron 1
OTTHUMT00000389683 ; HSD17B12-008; intron 2
OTTHUMT00000389683 ; HSD17B12-008; intron 2
OTTHUMT00000389683 ; HSD17B12-008; intron 2
ENST00000446181 ; AC023085.1-001; intron 1
ENST00000446181 ; AC023085.1-001; intron 1
ENST00000446181 ; AC023085.1-001; intron 1
ENST00000526615 ; HSD17B12-008; intron 2
ENST00000526615 ; HSD17B12-008; intron 2
ENST00000526615 ; HSD17B12-008; intron 2
Database links
  • ENTREZGENE: 100313777;MIR670

Mature sequence hsa-miR-670

Accession MIMAT0010357
Sequence

20 -  

gucccugaguguauguggug

 - 39

Get sequence
Evidence experimental; RAKE [1]
Predicted targets

References

1
PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).