Stem-loop sequence hsa-mir-550a-3

Accession MI0003762
Description Homo sapiens miR-550a-3 stem-loop
Gene family MIPF0000334; mir-550
Stem-loop 
  u    u c   cu   gca                  guc     gu 
ga gcuu g ugg  ggu   gugccugagggaguaaga   cuguu  u
|| |||| | |||  |||   ||||||||||||||||||   |||||  g
cu ugaa c acc  cua   cacggacucccucauucu   gauag  u
  c    - a   -u   ---                  -gu     aa
Get sequence
Deep sequencing
127 reads, 19 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr7: 29720350-29720444 [-]
sense
OTTHUMT00000327678 ; AC007255.7-001; intron 1
OTTHUMT00000327679 ; AC007255.7-002; intron 1
OTTHUMT00000327678 ; AC007255.7-001; intron 1
OTTHUMT00000327679 ; AC007255.7-002; intron 1
OTTHUMT00000327678 ; AC007255.7-001; intron 1
OTTHUMT00000327679 ; AC007255.7-002; intron 1
ENST00000442865 ; AC007255.7-001; intron 1
ENST00000426767 ; AC007255.7-002; intron 1
ENST00000390735 ; AC007276.1-201; exon 1
ENST00000442865 ; AC007255.7-001; intron 1
ENST00000426767 ; AC007255.7-002; intron 1
ENST00000390735 ; MIR550A3-201; exon 1
ENST00000442865 ; AC007255.7-001; intron 1
ENST00000426767 ; AC007255.7-002; intron 1
antisense
OTTHUMT00000327676 ; AC007276.5-001; intron 5
OTTHUMT00000327676 ; AC007276.5-001; intron 5
OTTHUMT00000327676 ; AC007276.5-001; intron 5
ENST00000414296 ; AC007276.5-001; intron 5
ENST00000414296 ; AC007276.5-001; intron 5
ENST00000414296 ; AC007276.5-001; intron 5
Database links

Mature sequence hsa-miR-550a-3-5p

Accession MIMAT0020925
Sequence

21 -  

agugccugagggaguaagag

 - 40

Get sequence
Deep sequencing 7 reads, 5 experiments
Evidence not experimental
Predicted targets

Mature sequence hsa-miR-550a-3p

Accession MIMAT0003257
Previous IDs hsa-miR-550;hsa-miR-550*;hsa-miR-550a*
Sequence

60 -  

ugucuuacucccucaggcacau

 - 81

Get sequence
Deep sequencing 360 reads, 16 experiments
Evidence experimental; RAKE [1], Solexa [2]
Predicted targets

References

1
PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2
PMID:20733160 "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs" Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Blood. 116:e118-e127(2010).
3
PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).