Stem-loop sequence hsa-mir-671

Accession MI0003760
Symbol HGNC:MIR671
Description Homo sapiens miR-671 stem-loop
Gene family MIPF0000358; mir-671
Stem-loop 
   ggu aa     ----a    a        a   a      ga           -u   g 
gca   g  cuggc     ggcc ggaagagg gga gcccug  ggggcuggagg  gau g
|||   |  |||||     |||| |||||||| ||| ||||||  |||||||||||  |||  
cgu   c  gaccg     ccgg cuuucucc ccu cgggac  ucuuggccucc  uug a
   ggu gg     agaug    g        a   -      --           uu   u
Get sequence
Deep sequencing
672 reads, 34 experiments
Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr7: 150935507-150935624 [+]
sense
OTTHUMT00000348648 ; CHPF2-001; 3'UTR (exon 4)
OTTHUMT00000348648 ; CHPF2-001; 3'UTR (exon 4)
OTTHUMT00000348648 ; CHPF2-001; 3'UTR (exon 4)
OTTHUMT00000348842 ; CHPF2-002; 3'UTR (exon 5)
OTTHUMT00000348842 ; CHPF2-002; 3'UTR (exon 5)
OTTHUMT00000348842 ; CHPF2-002; 3'UTR (exon 5)
ENST00000035307 ; CHPF2-001; 3'UTR (exon 4)
ENST00000377851 ; CHPF2-201; intron 4
ENST00000035307 ; CHPF2-001; 3'UTR (exon 4)
ENST00000377851 ; CHPF2-201; intron 4
ENST00000035307 ; CHPF2-001; 3'UTR (exon 4)
ENST00000495645 ; CHPF2-002; 3'UTR (exon 5)
ENST00000495645 ; CHPF2-002; 3'UTR (exon 5)
ENST00000495645 ; CHPF2-002; 3'UTR (exon 5)
Database links

Mature sequence hsa-miR-671-5p

Accession MIMAT0003880
Previous IDs hsa-miR-671
Sequence

29 -  

aggaagcccuggaggggcuggag

 - 51

Get sequence
Deep sequencing 579 reads, 24 experiments
Evidence experimental; cloned [1-2]
Predicted targets

Mature sequence hsa-miR-671-3p

Accession MIMAT0004819
Sequence

68 -  

uccgguucucagggcuccacc

 - 88

Get sequence
Deep sequencing 78 reads, 21 experiments
Evidence experimental; cloned [2]
Predicted targets

References

1
PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).