Stem-loop sequence hsa-mir-660

Accession MI0003684
Symbol HGNC:MIR660
Description Homo sapiens miR-660 stem-loop
Gene family MIPF0000113; mir-188
Stem-loop 
----------cu    c      -cauac    u      c    u   gaau 
            gcuc uucucc      ccau gcauau ggag ugu    u
            |||| ||||||      |||| |||||| |||| |||    c
            cgag gggagg      ggua cgugug ccuc aca    u
gugcuacuguuc    u      acauua    -      u    c   aaac
Get sequence
Deep sequencing
6531 reads, 38 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chrX: 49777849-49777945 [+]
sense
OTTHUMT00000056542 ; CLCN5-001; intron 3
OTTHUMT00000056543 ; CLCN5-002; intron 3
OTTHUMT00000109349 ; CLCN5-005; intron 3
OTTHUMT00000056542 ; CLCN5-001; intron 3
OTTHUMT00000056543 ; CLCN5-002; intron 3
OTTHUMT00000109349 ; CLCN5-005; intron 3
OTTHUMT00000056542 ; CLCN5-001; intron 3
OTTHUMT00000056543 ; CLCN5-002; intron 3
OTTHUMT00000109349 ; CLCN5-005; intron 3
ENST00000376088 ; CLCN5-001; intron 3
ENST00000376091 ; CLCN5-002; intron 3
ENST00000482218 ; CLCN5-005; intron 3
ENST00000450422 ; CLCN5-201; intron 3
ENST00000376088 ; CLCN5-001; intron 3
ENST00000376091 ; CLCN5-002; intron 3
ENST00000482218 ; CLCN5-005; intron 3
ENST00000450422 ; CLCN5-201; intron 3
ENST00000376088 ; CLCN5-001; intron 3
ENST00000376091 ; CLCN5-002; intron 3
ENST00000482218 ; CLCN5-005; intron 3
Clustered miRNAs
< 10kb from hsa-mir-660
hsa-mir-188 chrX: 49768109-49768194 [+]
hsa-mir-500a chrX: 49773039-49773122 [+]
hsa-mir-362 chrX: 49773572-49773636 [+]
hsa-mir-501 chrX: 49774330-49774413 [+]
hsa-mir-500b chrX: 49775280-49775358 [+]
hsa-mir-660 chrX: 49777849-49777945 [+]
hsa-mir-502 chrX: 49779206-49779291 [+]
Database links

Mature sequence hsa-miR-660-5p

Accession MIMAT0003338
Previous IDs hsa-miR-660
Sequence

16 -  

uacccauugcauaucggaguug

 - 37

Get sequence
Deep sequencing 6298 reads, 33 experiments
Evidence experimental; Microarray [1], RT-PCR [1], SAGE [1], cloned [2]
Predicted targets

Mature sequence hsa-miR-660-3p

Accession MIMAT0022711
Sequence

52 -  

accuccugugugcauggauua

 - 72

Get sequence
Deep sequencing 233 reads, 20 experiments
Evidence not experimental
Predicted targets

References

1
PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).