Stem-loop sequence hsa-mir-657

Accession MI0003681
Symbol HGNC:MIR657
Description Homo sapiens miR-657 stem-loop
Gene family MIPF0000498; mir-657
Stem-loop 
guguaguagagcua        --   u        agcguggaccgguccgggu 
              ggaggaga  ggg ccuggaga                   g
              ||||||||  ||| ||||||||                   g
              ucuccucu  ccc ggaucucu                   g
-------------g        ua   c        cccacucuuggacggccuu
Get sequence
Deep sequencing
20 reads, 3 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr17: 79099076-79099173 [-]
sense
OTTHUMT00000439039 ; AATK-009; intron 1
OTTHUMT00000439039 ; AATK-009; intron 1
OTTHUMT00000439041 ; AATK-008; intron 5
OTTHUMT00000439041 ; AATK-008; intron 5
OTTHUMT00000256056 ; AATK-002; intron 6
OTTHUMT00000256056 ; AATK-002; intron 6
OTTHUMT00000256056 ; AATK-002; intron 6
OTTHUMT00000256055 ; AATK-001; intron 7
OTTHUMT00000256055 ; AATK-001; intron 7
OTTHUMT00000439038 ; AATK-004; intron 7
OTTHUMT00000256055 ; AATK-001; intron 7
OTTHUMT00000439038 ; AATK-004; intron 7
ENST00000573469 ; AATK-009; intron 1
ENST00000573469 ; AATK-009; intron 1
ENST00000572339 ; AATK-008; intron 5
ENST00000572339 ; AATK-008; intron 5
ENST00000417379 ; AATK-002; intron 6
ENST00000417379 ; AATK-002; intron 6
ENST00000417379 ; AATK-002; intron 6
ENST00000326724 ; AATK-001; intron 7
ENST00000374792 ; AATK-201; intron 7
ENST00000326724 ; AATK-001; intron 7
ENST00000374792 ; AATK-004; intron 7
ENST00000326724 ; AATK-001; intron 7
ENST00000374792 ; AATK-004; intron 7
Clustered miRNAs
< 10kb from hsa-mir-657
hsa-mir-1250 chr17: 79106996-79107108 [-]
hsa-mir-338 chr17: 79099683-79099749 [-]
hsa-mir-3065 chr17: 79099677-79099755 [+]
hsa-mir-657 chr17: 79099076-79099173 [-]
Database links

Mature sequence hsa-miR-657

Accession MIMAT0003335
Sequence

61 -  

ggcagguucucacccucucuagg

 - 83

Get sequence
Evidence experimental; SAGE [1]
Validated targets
Predicted targets

References

1
PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).