Stem-loop sequence hsa-mir-655

Accession MI0003677
Symbol HGNC:MIR655
Description Homo sapiens miR-655 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
aacuaugcaag      ug           u      ua      cuuca 
           gauauu  aggagagguua ccgugu  uguucg     u
           ||||||  ||||||||||| ||||||  ||||||      
           cuauaa  uuuucuccaau gguaca  auaagu     u
-----cucaga      gu           u      ua      acuac
Get sequence
Deep sequencing
201 reads, 5 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr14: 101515887-101515983 [+]
sense
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; MIR381HG-001; intron 1
Clustered miRNAs
< 10kb from hsa-mir-655
hsa-mir-376c chr14: 101506027-101506092 [+]
hsa-mir-376a-2 chr14: 101506406-101506485 [+]
hsa-mir-654 chr14: 101506556-101506636 [+]
hsa-mir-376b chr14: 101506773-101506872 [+]
hsa-mir-376a-1 chr14: 101507119-101507186 [+]
hsa-mir-300 chr14: 101507700-101507782 [+]
hsa-mir-1185-1 chr14: 101509314-101509399 [+]
hsa-mir-1185-2 chr14: 101510535-101510620 [+]
hsa-mir-381 chr14: 101512257-101512331 [+]
hsa-mir-487b chr14: 101512792-101512875 [+]
hsa-mir-539 chr14: 101513658-101513735 [+]
hsa-mir-889 chr14: 101514238-101514316 [+]
hsa-mir-544a chr14: 101514995-101515085 [+]
hsa-mir-655 chr14: 101515887-101515983 [+]
hsa-mir-487a chr14: 101518783-101518862 [+]
hsa-mir-382 chr14: 101520643-101520718 [+]
hsa-mir-134 chr14: 101521024-101521096 [+]
hsa-mir-668 chr14: 101521595-101521660 [+]
hsa-mir-485 chr14: 101521756-101521828 [+]
hsa-mir-323b chr14: 101522556-101522637 [+]
Database links

Mature sequence hsa-miR-655

Accession MIMAT0003331
Sequence

61 -  

auaauacaugguuaaccucuuu

 - 82

Get sequence
Deep sequencing 199 reads, 3 experiments
Evidence experimental; Microarray [1], RT-PCR [1], SAGE [1], cloned [2]
Predicted targets

References

1
PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).