Stem-loop sequence hsa-mir-649

Accession

MI0003664

Symbol

HGNC:MIR649

Description

Homo sapiens miR-649 stem-loop

Gene family

MIPF0000547; mir-649

Stem-loop

ggcc    c      u  --        u      uu    gaaa     c 
    uagc aaauac gu  auuuuuga cgacau  gguu    aauau u
    |||| |||||| ||  |||||||| ||||||  ||||    |||||  
    gucg uuugug ca  ugagaacu guugug  ccaa    uuaug a
----    u      u  cc        u      -u    auga     u 

Deep sequencing

1 reads, 1 experiments

Genome context

• Coordinates (GRCh37.p5): chr22: 21388465-21388561 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000320476 ; AC002472.11-001; intron 1

  OTTHUMT00000320476 ; AC002472.11-001; intron 1

  OTTHUMT00000320476 ; AC002472.11-001; intron 1

  ENST00000450652 ; AC002472.11-001; intron 1

  ENST00000450652 ; AC002472.11-001; intron 1

  ENST00000450652 ; AC002472.11-001; intron 1

Database links

• ENTREZGENE: 693234;MIR649
• HGNC: 32905;MIR649

Mature sequence hsa-miR-649

• Accession: MIMAT0003319
• Sequence: 61 - aaaccuguguuguucaagaguc - 82
• Evidence: experimental; RT-PCR [1], SAGE [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-649
  • MICRORNA.ORG:hsa-miR-649
  • MIRDB:hsa-miR-649
  • RNA22-HSA:hsa-miR-649
  • TARGETMINER:hsa-miR-649
  • TARGETSCAN-VERT:hsa-miR-649

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).