Stem-loop sequence hsa-mir-648

Accession

MI0003663

Symbol

HGNC:MIR648

Description

Homo sapiens miR-648 stem-loop

Gene family

MIPF0000476; mir-648

Stem-loop

au   aga   c   ----      g    ----     gg  -g     gg 
  cac   cac ucc    aagugu cagg    gcacu  ug  gggcc  g
  |||   ||| |||    |||||| ||||    |||||  ||  |||||   
  gug   gug agg    uucacg gucc    cguga  gc  cccgg  g
--   gga   a   cuga      -    agga     aa  ga     ac 

Genome context

• Coordinates (GRCh37.p5): chr22: 18463634-18463727 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000316091 ; MICAL3-005; intron 1

  OTTHUMT00000316092 ; MICAL3-006; intron 1

  OTTHUMT00000316091 ; MICAL3-005; intron 1

  OTTHUMT00000316092 ; MICAL3-006; intron 1

  OTTHUMT00000447351 ; MICAL3-010; intron 1

  OTTHUMT00000316091 ; MICAL3-005; intron 1

  OTTHUMT00000316092 ; MICAL3-006; intron 1

  ENST00000441493 ; XXbac-B461K10.4-201; intron 1

  ENST00000429452 ; XXbac-B461K10.4-202; intron 1

  ENST00000495076 ; MICAL3-005; intron 1

  ENST00000424046 ; MICAL3-006; intron 1

  ENST00000444520 ; MICAL3-202; intron 1

  ENST00000207726 ; MICAL3-201; intron 1

  ENST00000441493 ; XXbac-B461K10.4-201; intron 1

  ENST00000429452 ; XXbac-B461K10.4-202; intron 1

  ENST00000495076 ; MICAL3-005; intron 1

  ENST00000424046 ; MICAL3-006; intron 1

  ENST00000444520 ; MICAL3-202; intron 1

  ENST00000207726 ; MICAL3-201; intron 1

  ENST00000441493 ; MICAL3-010; intron 1

  ENST00000495076 ; MICAL3-005; intron 1

  ENST00000424046 ; MICAL3-006; intron 1

  ENST00000444520 ; MICAL3-203; intron 1

  ENST00000207726 ; MICAL3-201; intron 1

  ENST00000429452 ; MICAL3-202; intron 1

Database links

• ENTREZGENE: 693233;MIR648
• HGNC: 32904;MIR648

Mature sequence hsa-miR-648

• Accession: MIMAT0003318
• Sequence: 16 - aagugugcagggcacuggu - 34
• Evidence: experimental; SAGE [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-648
  • MICRORNA.ORG:hsa-miR-648
  • MIRDB:hsa-miR-648
  • RNA22-HSA:hsa-miR-648
  • TARGETMINER:hsa-miR-648
  • TARGETSCAN-VERT:hsa-miR-648

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).