Stem-loop sequence hsa-mir-646

Accession MI0003661
Symbol HGNC:MIR646
Description Homo sapiens miR-646 stem-loop
Gene family MIPF0000605; mir-646
Stem-loop 
ga   -g      ---   ag     u    acacc      -  a    ug 
  uca  gagucu   gcc  uggag cagc     ugcuuu uc ccug  a
  |||  ||||||   |||  ||||| ||||     |||||| || ||||   
  ggu  cucgga   cgg  gucuc gucg     acgaag ag ggac  u
-c   ga      cuc   -a     c    -----      g  a    cc
Get sequence
Deep sequencing
2 reads, 2 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr20: 58883532-58883625 [+]
sense
OTTHUMT00000079949 ; RP5-1043L13.1-003; intron 1
OTTHUMT00000079950 ; RP5-1043L13.1-004; intron 1
OTTHUMT00000079949 ; RP5-1043L13.1-003; intron 1
OTTHUMT00000079950 ; RP5-1043L13.1-004; intron 1
OTTHUMT00000079949 ; RP5-1043L13.1-003; intron 1
OTTHUMT00000079950 ; RP5-1043L13.1-004; intron 1
OTTHUMT00000079947 ; RP5-1043L13.1-001; intron 3
OTTHUMT00000079947 ; RP5-1043L13.1-001; intron 3
OTTHUMT00000079947 ; RP5-1043L13.1-001; intron 3
ENST00000437035 ; RP5-1043L13.1-003; intron 1
ENST00000421257 ; RP5-1043L13.1-004; intron 1
ENST00000437035 ; RP5-1043L13.1-003; intron 1
ENST00000421257 ; RP5-1043L13.1-004; intron 1
ENST00000437035 ; RP5-1043L13.1-003; intron 1
ENST00000421257 ; RP5-1043L13.1-004; intron 1
ENST00000432910 ; RP5-1043L13.1-001; intron 3
ENST00000432910 ; RP5-1043L13.1-001; intron 3
ENST00000432910 ; RP5-1043L13.1-001; intron 3
Database links

Mature sequence hsa-miR-646

Accession MIMAT0003316
Sequence

61 -  

aagcagcugccucugaggc

 - 79

Get sequence
Evidence experimental; SAGE [1]
Predicted targets

References

1
PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).