Stem-loop sequence hsa-mir-640

Accession

MI0003655

Symbol

HGNC:MIR640

Description

Homo sapiens miR-640 stem-loop

Gene family

MIPF0000494; mir-640

Stem-loop

------- ug   --cu     a       aa     gaca   ----     c 
       g  acc    gggca guuccug  gauca    cau    cagau c
       |  |||    ||||| |||||||  |||||    |||    ||||| c
       c  ugg    uccgu caaggac  cuagu    gua    gucua u
gggguuc gu   cauc     c       --     acgg   aaau     u 

Genome context

• Coordinates (GRCh37.p5): chr19: 19545872-19545967 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000326674 ; GATAD2A-004; intron 1

  OTTHUMT00000326675 ; GATAD2A-005; intron 1

  OTTHUMT00000326676 ; GATAD2A-006; intron 1

  OTTHUMT00000326677 ; GATAD2A-007; intron 1

  OTTHUMT00000326681 ; GATAD2A-011; intron 1

  OTTHUMT00000326674 ; GATAD2A-004; intron 1

  OTTHUMT00000326675 ; GATAD2A-005; intron 1

  OTTHUMT00000326676 ; GATAD2A-006; intron 1

  OTTHUMT00000326677 ; GATAD2A-007; intron 1

  OTTHUMT00000326681 ; GATAD2A-011; intron 1

  OTTHUMT00000326674 ; GATAD2A-004; intron 1

  OTTHUMT00000326675 ; GATAD2A-005; intron 1

  OTTHUMT00000326676 ; GATAD2A-006; intron 1

  OTTHUMT00000326677 ; GATAD2A-007; intron 1

  OTTHUMT00000326681 ; GATAD2A-011; intron 1

  OTTHUMT00000326672 ; GATAD2A-002; intron 2

  OTTHUMT00000326672 ; GATAD2A-002; intron 2

  OTTHUMT00000326672 ; GATAD2A-002; intron 2

  ENST00000417582 ; GATAD2A-004; intron 1

  ENST00000494516 ; GATAD2A-011; intron 1

  ENST00000457895 ; GATAD2A-006; intron 1

  ENST00000448576 ; GATAD2A-005; intron 1

  ENST00000432704 ; GATAD2A-007; intron 1

  ENST00000360315 ; GATAD2A-202; intron 1

  ENST00000252577 ; GATAD2A-201; intron 1

  ENST00000537887 ; GATAD2A-204; intron 1

  ENST00000417582 ; GATAD2A-004; intron 1

  ENST00000494516 ; GATAD2A-011; intron 1

  ENST00000457895 ; GATAD2A-006; intron 1

  ENST00000448576 ; GATAD2A-005; intron 1

  ENST00000432704 ; GATAD2A-007; intron 1

  ENST00000360315 ; GATAD2A-202; intron 1

  ENST00000252577 ; GATAD2A-201; intron 1

  ENST00000537887 ; GATAD2A-204; intron 1

  ENST00000417582 ; GATAD2A-004; intron 1

  ENST00000494516 ; GATAD2A-011; intron 1

  ENST00000457895 ; GATAD2A-006; intron 1

  ENST00000448576 ; GATAD2A-005; intron 1

  ENST00000432704 ; GATAD2A-007; intron 1

  ENST00000360315 ; GATAD2A-202; intron 1

  ENST00000252577 ; GATAD2A-201; intron 1

  ENST00000537887 ; GATAD2A-204; intron 1

  ENST00000404158 ; GATAD2A-002; intron 2

  ENST00000404158 ; GATAD2A-002; intron 2

  ENST00000404158 ; GATAD2A-002; intron 2

Database links

• ENTREZGENE: 693225;MIR640
• HGNC: 32896;MIR640

Mature sequence hsa-miR-640

• Accession: MIMAT0003310
• Sequence: 61 - augauccaggaaccugccucu - 81
• Evidence: experimental; RT-PCR [1], SAGE [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-640
  • MICRORNA.ORG:hsa-miR-640
  • MIRDB:hsa-miR-640
  • RNA22-HSA:hsa-miR-640
  • TARGETMINER:hsa-miR-640
  • TARGETSCAN-VERT:hsa-miR-640

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).