Stem-loop sequence hsa-mir-624

Accession

MI0003638

Symbol

HGNC:MIR624

Description

Homo sapiens miR-624 stem-loop

Gene family

MIPF0000523; mir-624

Stem-loop

-----------                                   -- ag  g 
           aaugcuguuucaagguaguaccaguaccuuguguu  c  ug a
           |||||||||||||||||||||||||||||||||||  |  ||  
           uuacgauagaguuccauuaugguuauggaacacaa  g  ac a
gugaauccaca                                   au ga  c 

Deep sequencing

42 reads, 18 experiments

Genome context

• Coordinates (GRCh37.p5): chr14: 31483852-31483948 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000276609 ; STRN3-001; intron 1

  OTTHUMT00000409713 ; STRN3-002; intron 1

  OTTHUMT00000409714 ; STRN3-003; intron 1

  OTTHUMT00000276609 ; STRN3-001; intron 1

  OTTHUMT00000409713 ; STRN3-002; intron 1

  OTTHUMT00000409714 ; STRN3-003; intron 1

  OTTHUMT00000276609 ; STRN3-001; intron 1

  OTTHUMT00000409713 ; STRN3-002; intron 1

  OTTHUMT00000409714 ; STRN3-003; intron 1

  ENST00000355683 ; STRN3-001; intron 1

  ENST00000357479 ; STRN3-002; intron 1

  ENST00000555358 ; STRN3-003; intron 1

  ENST00000355683 ; STRN3-001; intron 1

  ENST00000357479 ; STRN3-002; intron 1

  ENST00000555358 ; STRN3-003; intron 1

  ENST00000355683 ; STRN3-001; intron 1

  ENST00000357479 ; STRN3-002; intron 1

  ENST00000555358 ; STRN3-003; intron 1

Database links

• ENTREZGENE: 693209;MIR624
• HGNC: 32880;MIR624

Mature sequence hsa-miR-624-5p

• Accession: MIMAT0003293
• Previous IDs: hsa-miR-624;hsa-miR-624*
• Sequence: 16 - uaguaccaguaccuuguguuca - 37
• Deep sequencing: 38 reads, 16 experiments
• Evidence: experimental; SAGE [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-624-5p
  • MICRORNA.ORG:hsa-miR-624-5p
  • MIRDB:hsa-miR-624-5p
  • RNA22-HSA:hsa-miR-624-5p
  • TARGETMINER:hsa-miR-624-5p

Mature sequence hsa-miR-624-3p

• Accession: MIMAT0004807
• Previous IDs: hsa-miR-624
• Sequence: 54 - cacaagguauugguauuaccu - 74
• Deep sequencing: 4 reads, 4 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-624-3p
  • MICRORNA.ORG:hsa-miR-624-3p
  • MIRDB:hsa-miR-624-3p
  • RNA22-HSA:hsa-miR-624-3p
  • TARGETMINER:hsa-miR-624-3p
  • TARGETSCAN-VERT:hsa-miR-624

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).