Stem-loop sequence hsa-mir-616

Accession

MI0003629

Symbol

HGNC:MIR616

Description

Homo sapiens miR-616 stem-loop

Gene family

MIPF0000507; mir-616

Stem-loop

-------u     a       ca      a                -  gac 
        uaggu auuccuc  cucaaa cccuucagugacuucc au   a
        ||||| |||||||  |||||| |||||||||||||||| ||    
        gucca uaaggag  gaguuu gggagguuacugaagg ua   u
aaaauuuu     g       ac      -                a  aag 

Deep sequencing

55 reads, 14 experiments

Genome context

• Coordinates (GRCh37.p5): chr12: 57912946-57913042 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000407134 ; DDIT3-006; intron 1

  OTTHUMT00000407135 ; DDIT3-002; intron 1

  OTTHUMT00000407137 ; DDIT3-001; intron 1

  OTTHUMT00000407138 ; DDIT3-005; intron 1

  OTTHUMT00000407139 ; DDIT3-004; intron 1

  OTTHUMT00000407134 ; DDIT3-006; intron 1

  OTTHUMT00000407135 ; DDIT3-002; intron 1

  OTTHUMT00000407137 ; DDIT3-001; intron 1

  OTTHUMT00000407138 ; DDIT3-005; intron 1

  OTTHUMT00000407139 ; DDIT3-004; intron 1

  OTTHUMT00000407134 ; DDIT3-006; intron 1

  OTTHUMT00000407135 ; DDIT3-002; intron 1

  OTTHUMT00000407137 ; DDIT3-001; intron 1

  OTTHUMT00000407138 ; DDIT3-005; intron 1

  OTTHUMT00000407139 ; DDIT3-004; intron 1

  ENST00000547303 ; DDIT3-006; intron 1

  ENST00000551116 ; DDIT3-002; intron 1

  ENST00000346473 ; DDIT3-001; intron 1

  ENST00000552740 ; DDIT3-005; intron 1

  ENST00000547526 ; DDIT3-004; intron 1

  ENST00000547303 ; DDIT3-006; intron 1

  ENST00000551116 ; DDIT3-002; intron 1

  ENST00000346473 ; DDIT3-001; intron 1

  ENST00000552740 ; DDIT3-005; intron 1

  ENST00000547526 ; DDIT3-004; intron 1

  ENST00000547303 ; DDIT3-006; intron 1

  ENST00000551116 ; DDIT3-002; intron 1

  ENST00000346473 ; DDIT3-001; intron 1

  ENST00000552740 ; DDIT3-005; intron 1

  ENST00000547526 ; DDIT3-004; intron 1

Database links

• ENTREZGENE: 693201;MIR616
• HGNC: 32872;MIR616

Mature sequence hsa-miR-616-5p

• Accession: MIMAT0003284
• Previous IDs: hsa-miR-616;hsa-miR-616*
• Sequence: 16 - acucaaaacccuucagugacuu - 37
• Deep sequencing: 7 reads, 5 experiments
• Evidence: experimental; SAGE [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-616-5p
  • MICRORNA.ORG:hsa-miR-616-5p
  • MIRDB:hsa-miR-616-5p
  • RNA22-HSA:hsa-miR-616-5p
  • TARGETMINER:hsa-miR-616-5p

Mature sequence hsa-miR-616-3p

• Accession: MIMAT0004805
• Previous IDs: hsa-miR-616
• Sequence: 56 - agucauuggaggguuugagcag - 77
• Deep sequencing: 48 reads, 11 experiments
• Evidence: experimental; cloned [2]
• Validated targets:
  • TARBASE:hsa-miR-616-3p
• Predicted targets:
  • DIANA-MICROT:hsa-miR-616-3p
  • MICRORNA.ORG:hsa-miR-616-3p
  • MIRDB:hsa-miR-616-3p
  • RNA22-HSA:hsa-miR-616-3p
  • TARGETMINER:hsa-miR-616-3p
  • TARGETSCAN-VERT:hsa-miR-616

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).