Stem-loop sequence hsa-mir-615

Accession

MI0003628

Symbol

HGNC:MIR615

Description

Homo sapiens miR-615 stem-loop

Gene family

MIPF0000342; mir-615

Stem-loop

cuc   ag   c          -uc     u        cu    g ug 
   ggg  ggg gggagggggg   cccgg gcucggau  cgag g  c
   |||  ||| ||||||||||   ||||| ||||||||  |||| |  u
   ccc  ccc cccuucuccc   ggguc cgagccug  gcuu u  u
ccc   aa   -          ucu     -        --    g ua 

Deep sequencing

513 reads, 32 experiments

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

• Coordinates (GRCh37.p5): chr12: 54427734-54427829 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000358949 ; HOXC5-003; intron 1

  OTTHUMT00000358948 ; HOXC5-002; intron 1

  OTTHUMT00000358947 ; HOXC5-001; intron 1

  OTTHUMT00000358964 ; HOXC4-002; intron 1

  OTTHUMT00000358949 ; HOXC5-003; intron 1

  OTTHUMT00000358948 ; HOXC5-002; intron 1

  OTTHUMT00000358947 ; HOXC5-001; intron 1

  OTTHUMT00000358964 ; HOXC4-002; intron 1

  OTTHUMT00000358949 ; HOXC5-003; intron 1

  OTTHUMT00000358948 ; HOXC5-002; intron 1

  OTTHUMT00000358947 ; HOXC5-001; intron 1

  OTTHUMT00000358964 ; HOXC4-002; intron 1

  ENST00000513209 ; HOXC5-003; intron 1

  ENST00000512206 ; HOXC5-002; intron 1

  ENST00000312492 ; HOXC5-001; intron 1

  ENST00000303406 ; HOXC4-002; intron 1

  ENST00000513209 ; HOXC5-003; intron 1

  ENST00000512206 ; HOXC5-002; intron 1

  ENST00000312492 ; HOXC5-001; intron 1

  ENST00000303406 ; HOXC4-002; intron 1

  ENST00000513209 ; HOXC5-003; intron 1

  ENST00000512206 ; HOXC5-002; intron 1

  ENST00000312492 ; HOXC5-001; intron 1

  ENST00000303406 ; HOXC4-002; intron 1

Database links

• ENTREZGENE: 693200;MIR615
• HGNC: 32871;MIR615

Mature sequence hsa-miR-615-5p

• Accession: MIMAT0004804
• Sequence: 18 - ggggguccccggugcucggauc - 39
• Deep sequencing: 133 reads, 14 experiments
• Evidence: experimental; cloned [2]
• Validated targets:
  • MIRECORDS:hsa-miR-615-5p
  • TARBASE:hsa-miR-615-5p
• Predicted targets:
  • DIANA-MICROT:hsa-miR-615-5p
  • MICRORNA.ORG:hsa-miR-615-5p
  • MIRDB:hsa-miR-615-5p
  • RNA22-HSA:hsa-miR-615-5p
  • TARGETMINER:hsa-miR-615-5p
  • TARGETSCAN-VERT:hsa-miR-615-5p

Mature sequence hsa-miR-615-3p

• Accession: MIMAT0003283
• Previous IDs: hsa-miR-615
• Sequence: 61 - uccgagccugggucucccucuu - 82
• Deep sequencing: 347 reads, 27 experiments
• Evidence: experimental; RT-PCR [1], SAGE [1], cloned [2]
• Validated targets:
  • TARBASE:hsa-miR-615-3p
• Predicted targets:
  • DIANA-MICROT:hsa-miR-615-3p
  • MICRORNA.ORG:hsa-miR-615-3p
  • MIRDB:hsa-miR-615-3p
  • RNA22-HSA:hsa-miR-615-3p
  • TARGETMINER:hsa-miR-615-3p
  • TARGETSCAN-VERT:hsa-miR-615-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).