Stem-loop sequence hsa-mir-608

Accession

MI0003621

Symbol

HGNC:MIR608

Description

Homo sapiens miR-608 stem-loop

Gene family

MIPF0000972; mir-608

Stem-loop

-gg   -aa g  g      -  ug  g  ---g   c     cguuuaaaa 
   gcc   g ug gccagg gg  gu uu    gga agcuc         a
   |||   | || |||||| ||  || ||    ||| |||||         g
   ugg   c ac ugguuc cc  cg aa    ccu ucgag         g
aga   aca g  g      u  gu  g  acua   -     aaccucuac 

Deep sequencing

1 reads, 1 experiments

Genome context

• Coordinates (GRCh37.p5): chr10: 102734742-102734841 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000049920 ; SEMA4G-002; intron 3

  OTTHUMT00000374990 ; SEMA4G-008; intron 3

  OTTHUMT00000049919 ; SEMA4G-001; intron 3

  OTTHUMT00000374991 ; SEMA4G-013; intron 3

  OTTHUMT00000049920 ; SEMA4G-002; intron 3

  OTTHUMT00000374990 ; SEMA4G-008; intron 3

  OTTHUMT00000049919 ; SEMA4G-001; intron 3

  OTTHUMT00000374991 ; SEMA4G-013; intron 3

  OTTHUMT00000049920 ; SEMA4G-002; intron 3

  OTTHUMT00000374990 ; SEMA4G-008; intron 3

  OTTHUMT00000049919 ; SEMA4G-001; intron 3

  OTTHUMT00000374991 ; SEMA4G-013; intron 3

  OTTHUMT00000374985 ; SEMA4G-007; intron 4

  OTTHUMT00000374986 ; SEMA4G-003; intron 4

  OTTHUMT00000374987 ; SEMA4G-009; intron 4

  OTTHUMT00000374985 ; SEMA4G-007; intron 4

  OTTHUMT00000374986 ; SEMA4G-003; intron 4

  OTTHUMT00000374987 ; SEMA4G-009; intron 4

  OTTHUMT00000374985 ; SEMA4G-007; intron 4

  OTTHUMT00000374986 ; SEMA4G-003; intron 4

  OTTHUMT00000374987 ; SEMA4G-009; intron 4

  ENST00000370250 ; SEMA4G-002; intron 3

  ENST00000517724 ; SEMA4G-008; intron 3

  ENST00000210633 ; SEMA4G-001; intron 3

  ENST00000519756 ; SEMA4G-013; intron 3

  ENST00000210633 ; SEMA4G-001; intron 3

  ENST00000519756 ; SEMA4G-013; intron 3

  ENST00000370250 ; SEMA4G-002; intron 3

  ENST00000517724 ; SEMA4G-008; intron 3

  ENST00000370250 ; SEMA4G-002; intron 3

  ENST00000517724 ; SEMA4G-008; intron 3

  ENST00000210633 ; SEMA4G-001; intron 3

  ENST00000519756 ; SEMA4G-013; intron 3

  ENST00000519649 ; SEMA4G-007; intron 4

  ENST00000521006 ; SEMA4G-003; intron 4

  ENST00000518124 ; SEMA4G-009; intron 4

  ENST00000457585 ; SEMA4G-201; intron 4

  ENST00000457585 ; SEMA4G-201; intron 4

  ENST00000518124 ; SEMA4G-009; intron 4

  ENST00000521006 ; SEMA4G-003; intron 4

  ENST00000519649 ; SEMA4G-007; intron 4

  ENST00000519649 ; SEMA4G-007; intron 4

  ENST00000521006 ; SEMA4G-003; intron 4

  ENST00000518124 ; SEMA4G-009; intron 4

  antisense

  OTTHUMT00000374984 ; MRPL43-013; intron 3

  OTTHUMT00000374984 ; MRPL43-013; intron 3

  OTTHUMT00000374984 ; MRPL43-013; intron 3

  ENST00000523148 ; MRPL43-013; intron 3

  ENST00000523148 ; MRPL43-013; intron 3

  ENST00000523148 ; MRPL43-013; intron 3

Database links

• ENTREZGENE: 693193;MIR608
• HGNC: 32864;MIR608

Mature sequence hsa-miR-608

• Accession: MIMAT0003276
• Sequence: 16 - aggggugguguugggacagcuccgu - 40
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Microarray [1], SAGE [1]
• Validated targets:
  • MIRTARBASE:hsa-miR-608
  • TARBASE:hsa-miR-608
• Predicted targets:
  • DIANA-MICROT:hsa-miR-608
  • MICRORNA.ORG:hsa-miR-608
  • MIRDB:hsa-miR-608
  • RNA22-HSA:hsa-miR-608
  • TARGETMINER:hsa-miR-608
  • TARGETSCAN-VERT:hsa-miR-608

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).