Stem-loop sequence hsa-mir-590

AccessionMI0003602
Symbol HGNC:MIR590
DescriptionHomo sapiens miR-590 stem-loop
Gene family MIPF0000418; mir-590
Stem-loop
   --------uagc        a  g       u       g     ua   u 
5'             cagucaga au agcuuau cauaaaa ugcag  ugg g
               |||||||| || ||||||| ||||||| |||||  ||| a
3'             guuagucu ug ucgaaua guauuuu auguc  acu a
   acgacguacaaa        c  a       u       a     ua   g 
Get sequence
Deep sequencing
1476 reads, 523 reads per million, 63 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (GRCh38) Overlapping transcripts
chr7: 74191198-74191294 [+]
sense
OTTHUMT00000314560 ; NCF1-001; intron 1
OTTHUMT00000343530 ; NCF1-015; intron 1
OTTHUMT00000343529 ; NCF1-014; intron 1
OTTHUMT00000343436 ; NCF1-007; intron 1
OTTHUMT00000314561 ; NCF1-002; intron 1
OTTHUMT00000343438 ; NCF1-009; intron 1
OTTHUMT00000314562 ; NCF1-003; exon 1
ENST00000289473 ; NCF1-001; intron 1
ENST00000438106 ; NCF1-015; intron 1
ENST00000433458 ; NCF1-014; intron 1
ENST00000449343 ; NCF1-007; intron 1
ENST00000398421 ; NCF1-002; intron 1
ENST00000455062 ; NCF1-009; intron 1
ENST00000443956 ; NCF1-003; exon 1
antisense
ENST00000380775 ; STAG3L2-202; intron 8
Database links

Mature sequence hsa-miR-590-5p

Accession MIMAT0003258
Previous IDshsa-miR-590
Sequence

16 - 

gagcuuauucauaaaagugcag

 - 37

Get sequence
Deep sequencing393 reads, 47 experiments
Evidence experimental; Microarray [1], SAGE [1], cloned [2]
Validated targets
Predicted targets

Mature sequence hsa-miR-590-3p

Accession MIMAT0004801
Sequence

56 - 

uaauuuuauguauaagcuagu

 - 76

Get sequence
Deep sequencing299 reads, 45 experiments
Evidence experimental; cloned [2]
Validated targets
Predicted targets

References

1
PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).