Stem-loop sequence hsa-mir-550a-2

Accession MI0003601
Previous IDs hsa-mir-550-2
Symbol HGNC:MIR550-2
Description Homo sapiens miR-550a-2 stem-loop
Gene family MIPF0000334; mir-550
Stem-loop 
ugaugcuuu   g     u ca                  g c     gu 
         gcu gcugg g  gugccugagggaguaaga c cuguu  u
         ||| ||||| |  |||||||||||||||||| | |||||  g
         uga cgacc c  cacggacucccucauucu g gauag  u
-----ucuc   g     u ua                  - u     ac
Get sequence
Deep sequencing
126 reads, 18 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr7: 32772593-32772689 [+]
sense
ENST00000404479 ; AVL9-202; intron 10
ENST00000404479 ; AVL9-202; intron 10
ENST00000404479 ; AVL9-201; intron 10
antisense
OTTHUMT00000328640 ; AC018633.4-001; intron 3
OTTHUMT00000328640 ; AC018633.4-001; intron 3
OTTHUMT00000328640 ; AC018633.4-001; intron 3
ENST00000417811 ; AC018633.4-001; intron 3
ENST00000417811 ; AC018633.4-001; intron 3
ENST00000417811 ; AC018633.4-001; intron 3
Clustered miRNAs
< 10kb from hsa-mir-550a-2
hsa-mir-550b-2 chr7: 32772593-32772689 [-]
hsa-mir-550a-2 chr7: 32772593-32772689 [+]
Database links

Mature sequence hsa-miR-550a-5p

Accession MIMAT0004800
Previous IDs hsa-miR-550;hsa-miR-550a
Sequence

22 -  

agugccugagggaguaagagccc

 - 44

Get sequence
Deep sequencing 12 reads, 4 experiments
Evidence experimental; cloned [2]
Predicted targets

Mature sequence hsa-miR-550a-3p

Accession MIMAT0003257
Previous IDs hsa-miR-550;hsa-miR-550*;hsa-miR-550a*
Sequence

61 -  

ugucuuacucccucaggcacau

 - 82

Get sequence
Deep sequencing 360 reads, 16 experiments
Evidence experimental; SAGE [1]
Predicted targets

References

1
PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).