Stem-loop sequence hsa-mir-550a-1

Accession

MI0003600

Previous IDs

hsa-mir-550-1

Symbol

HGNC:MIR550-1

Description

Homo sapiens miR-550a-1 stem-loop

Gene family

MIPF0000334; mir-550

Stem-loop

u  u    u c   cu   gca                  g c     gu 
 ga gcuu g ugg  ggu   gugccugagggaguaaga c cuguu  u
 || |||| | |||  |||   |||||||||||||||||| | |||||  g
 cu ugaa c acc  cua   cacggacucccucauucu g gauag  u
u  c    - a   -u   ---                  - u     aa 

Deep sequencing

126 reads, 18 experiments

Genome context

• Coordinates (GRCh37.p5): chr7: 30329410-30329506 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000214992 ; ZNRF2-001; intron 1

  OTTHUMT00000214992 ; ZNRF2-001; intron 1

  OTTHUMT00000214992 ; ZNRF2-001; intron 1

  ENST00000323037 ; ZNRF2-001; intron 1

  ENST00000323037 ; ZNRF2-001; intron 1

  ENST00000323037 ; ZNRF2-001; intron 1

  ENST00000319243 ; ZNRF2-201; intron 2

  ENST00000319243 ; ZNRF2-201; intron 2

Clustered miRNAs

< 10kb from hsa-mir-550a-1

• hsa-mir-550a-1: chr7: 30329410-30329506 [+]
• hsa-mir-550b-1: chr7: 30329410-30329506 [-]

Database links

• ENTREZGENE: 693133;MIR550A1
• HGNC: 32804;MIR550-1

Mature sequence hsa-miR-550a-5p

• Accession: MIMAT0004800
• Previous IDs: hsa-miR-550;hsa-miR-550a
• Sequence: 22 - agugccugagggaguaagagccc - 44
• Deep sequencing: 12 reads, 4 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-550a-5p
  • MICRORNA.ORG:hsa-miR-550a-5p
  • MIRDB:hsa-miR-550a-5p
  • RNA22-HSA:hsa-miR-550a-5p
  • TARGETMINER:hsa-miR-550a-5p
  • TARGETSCAN-VERT:hsa-miR-550

Mature sequence hsa-miR-550a-3p

• Accession: MIMAT0003257
• Previous IDs: hsa-miR-550;hsa-miR-550*;hsa-miR-550a*
• Sequence: 61 - ugucuuacucccucaggcacau - 82
• Deep sequencing: 360 reads, 16 experiments
• Evidence: experimental; SAGE [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-550a-3p
  • MICRORNA.ORG:hsa-miR-550a-3p
  • MIRDB:hsa-miR-550a-3p
  • RNA22-HSA:hsa-miR-550a-3p
  • TARGETMINER:hsa-miR-550a-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).