Stem-loop sequence hsa-mir-589

Accession

MI0003599

Symbol

HGNC:MIR589

Description

Homo sapiens miR-589 stem-loop

Gene family

MIPF0000496; mir-589

Stem-loop

ucca   ugu  cca     cc   a     -a   c  c       u   u 
    gcc   gc   gcagc  cug gaacc  cgu ug ucugagc ggg a
    |||   ||   |||||  ||| |||||  ||| || ||||||| ||| c
    cgg   cg   cgucg  gac cuugg  gua ac agacuug ucc u
---c   --u  -ac     ca   c     cc   a  a       -   g 

Deep sequencing

740 reads, 19 experiments

Genome context

• Coordinates (GRCh37.p5): chr7: 5535450-5535548 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000324094 ; FBXL18-004; intron 1

  OTTHUMT00000324094 ; FBXL18-004; intron 1

  OTTHUMT00000324094 ; FBXL18-004; intron 1

  OTTHUMT00000324092 ; FBXL18-002; intron 3

  OTTHUMT00000324093 ; FBXL18-003; intron 3

  OTTHUMT00000324092 ; FBXL18-002; intron 3

  OTTHUMT00000324093 ; FBXL18-003; intron 3

  OTTHUMT00000324092 ; FBXL18-002; intron 3

  OTTHUMT00000324093 ; FBXL18-003; intron 3

  ENST00000458142 ; FBXL18-004; intron 1

  ENST00000458142 ; FBXL18-004; intron 1

  ENST00000458142 ; FBXL18-004; intron 1

  ENST00000297035 ; FBXL18-201; intron 2

  ENST00000297035 ; FBXL18-201; intron 2

  ENST00000415009 ; FBXL18-002; intron 3

  ENST00000382368 ; FBXL18-003; intron 3

  ENST00000312577 ; FBXL18-202; intron 3

  ENST00000453700 ; FBXL18-203; intron 3

  ENST00000415009 ; FBXL18-002; intron 3

  ENST00000382368 ; FBXL18-003; intron 3

  ENST00000312577 ; FBXL18-202; intron 3

  ENST00000453700 ; FBXL18-203; intron 3

  ENST00000415009 ; FBXL18-002; intron 3

  ENST00000382368 ; FBXL18-003; intron 3

  ENST00000453700 ; FBXL18-201; intron 3

Database links

• ENTREZGENE: 693174;MIR589
• HGNC: 32845;MIR589

Mature sequence hsa-miR-589-5p

• Accession: MIMAT0004799
• Previous IDs: hsa-miR-589
• Sequence: 24 - ugagaaccacgucugcucugag - 45
• Deep sequencing: 582 reads, 19 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-589-5p
  • MICRORNA.ORG:hsa-miR-589-5p
  • MIRDB:hsa-miR-589-5p
  • RNA22-HSA:hsa-miR-589-5p
  • TARGETMINER:hsa-miR-589-5p
  • TARGETSCAN-VERT:hsa-miR-589

Mature sequence hsa-miR-589-3p

• Accession: MIMAT0003256
• Previous IDs: hsa-miR-589;hsa-miR-589*
• Sequence: 61 - ucagaacaaaugccgguucccaga - 84
• Deep sequencing: 158 reads, 11 experiments
• Evidence: experimental; SAGE [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-589-3p
  • MICRORNA.ORG:hsa-miR-589-3p
  • MIRDB:hsa-miR-589-3p
  • RNA22-HSA:hsa-miR-589-3p
  • TARGETMINER:hsa-miR-589-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).