Stem-loop sequence hsa-mir-548a-2

AccessionMI0003598 (change log)
Symbol HGNC:MIR548A2
DescriptionHomo sapiens miR-548a-2 stem-loop
Gene family MIPF0000317; mir-548
Literature search

56 open access papers mention hsa-mir-548a-2
(170 sentences)

Stem-loop
   ugugaug        guuu               -g     uu        a 
5'        uguauuag    gugcaaaaguaauug  gguuu  ugccguua a
          ||||||||    |||||||||||||||  |||||  ||||||||  
3'        auauaauc    cacguuuucauuaac  ucaaa  acgguaau a
   ------a        aaac               gg     --        g 
Get sequence
Deep sequencing
12241 reads, 25.2 reads per million, 127 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chr6: 135239160-135239256 [+]
antisense
OTTHUMT00000042335 ; ALDH8A1-002; 3'UTR (exon 6)
OTTHUMT00000042334 ; ALDH8A1-001; 3'UTR (exon 7)
ENST00000367845 ; ALDH8A1-002; 3'UTR (exon 6)
ENST00000265605 ; ALDH8A1-001; 3'UTR (exon 7)
Database links

Mature sequence hsa-miR-548a-3p

Accession MIMAT0003251
Previous IDshsa-miR-548a
Sequence

61 - 

caaaacuggcaauuacuuuugc

 - 82

Get sequence
Deep sequencing21333 reads, 118 experiments
Evidence experimental; SAGE [1], cloned [2]
Database links
Predicted targets

References

1
PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).