Stem-loop sequence hsa-mir-548b

Accession

MI0003596

Symbol

HGNC:MIR548B

Description

Homo sapiens miR-548b stem-loop

Gene family

MIPF0000317; mir-548

Stem-loop

cagacuauauau                       u      g   uuuau 
            uuagguuggcgcaaaaguaauug gguuuu gcc     u
            ||||||||||||||||||||||| |||||| |||      
            aauccaaccguguuuucguugac ccaaga cgg     u
-------uucau                       u      a   uaacu 

Deep sequencing

74 reads, 23 experiments

Genome context

• Coordinates (GRCh37.p5): chr6: 119390212-119390308 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000042009 ; FAM184A-001; intron 1

  OTTHUMT00000380866 ; FAM184A-007; intron 1

  OTTHUMT00000380867 ; FAM184A-009; intron 1

  OTTHUMT00000380868 ; FAM184A-008; intron 1

  OTTHUMT00000380869 ; FAM184A-010; intron 1

  OTTHUMT00000042009 ; FAM184A-001; intron 1

  OTTHUMT00000380866 ; FAM184A-007; intron 1

  OTTHUMT00000380867 ; FAM184A-009; intron 1

  OTTHUMT00000380868 ; FAM184A-008; intron 1

  OTTHUMT00000380869 ; FAM184A-010; intron 1

  OTTHUMT00000042009 ; FAM184A-001; intron 1

  OTTHUMT00000380866 ; FAM184A-007; intron 1

  OTTHUMT00000380867 ; FAM184A-009; intron 1

  OTTHUMT00000380868 ; FAM184A-008; intron 1

  OTTHUMT00000380869 ; FAM184A-010; intron 1

  ENST00000338891 ; FAM184A-001; intron 1

  ENST00000352896 ; FAM184A-007; intron 1

  ENST00000368475 ; FAM184A-009; intron 1

  ENST00000521531 ; FAM184A-008; intron 1

  ENST00000522284 ; FAM184A-010; intron 1

  ENST00000338891 ; FAM184A-001; intron 1

  ENST00000352896 ; FAM184A-007; intron 1

  ENST00000368475 ; FAM184A-009; intron 1

  ENST00000521531 ; FAM184A-008; intron 1

  ENST00000522284 ; FAM184A-010; intron 1

  ENST00000338891 ; FAM184A-001; intron 1

  ENST00000352896 ; FAM184A-007; intron 1

  ENST00000368475 ; FAM184A-009; intron 1

  ENST00000521531 ; FAM184A-008; intron 1

  ENST00000522284 ; FAM184A-010; intron 1

Database links

• ENTREZGENE: 693128;MIR548B
• HGNC: 32799;MIR548B

Mature sequence hsa-miR-548b-5p

• Accession: MIMAT0004798
• Sequence: 25 - aaaaguaauugugguuuuggcc - 46
• Deep sequencing: 59 reads, 21 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-548b-5p
  • MICRORNA.ORG:hsa-miR-548b-5p
  • MIRDB:hsa-miR-548b-5p
  • RNA22-HSA:hsa-miR-548b-5p
  • TARGETMINER:hsa-miR-548b-5p
  • TARGETSCAN-VERT:hsa-miR-548b-5p

Mature sequence hsa-miR-548b-3p

• Accession: MIMAT0003254
• Previous IDs: hsa-miR-548b
• Sequence: 61 - caagaaccucaguugcuuuugu - 82
• Deep sequencing: 15 reads, 7 experiments
• Evidence: experimental; SAGE [1], cloned [2]
• Validated targets:
  • TARBASE:hsa-miR-548b-3p
• Predicted targets:
  • DIANA-MICROT:hsa-miR-548b-3p
  • MICRORNA.ORG:hsa-miR-548b-3p
  • MIRDB:hsa-miR-548b-3p
  • RNA22-HSA:hsa-miR-548b-3p
  • TARGETMINER:hsa-miR-548b-3p
  • TARGETSCAN-VERT:hsa-miR-548b-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).