Stem-loop sequence hsa-mir-584

Accession

MI0003591

Symbol

HGNC:MIR584

Description

Homo sapiens miR-584 stem-loop

Gene family

MIPF0000533; mir-584

Stem-loop

-------     u         uua     u            g a   ug 
       uaggg gaccagcca   ugguu gccugggacuga g auu  c
       ||||| |||||||||   ||||| |||||||||||| | |||   
       guccc cugguuggu   accaa cggaccuugacu u uag  u
caacgaa     u         cgg     c            g a   gg 

Deep sequencing

9854 reads, 20 experiments

Genome context

• Coordinates (GRCh37.p5): chr5: 148441876-148441972 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000373381 ; SH3TC2-012; intron 1

  OTTHUMT00000373359 ; SH3TC2-004; intron 1

  OTTHUMT00000252186 ; SH3TC2-001; intron 1

  OTTHUMT00000373360 ; SH3TC2-005; intron 1

  OTTHUMT00000373362 ; SH3TC2-007; intron 1

  OTTHUMT00000373358 ; SH3TC2-003; intron 1

  OTTHUMT00000373412 ; SH3TC2-013; intron 1

  OTTHUMT00000373361 ; SH3TC2-006; intron 1

  OTTHUMT00000373381 ; SH3TC2-012; intron 1

  OTTHUMT00000373359 ; SH3TC2-004; intron 1

  OTTHUMT00000252186 ; SH3TC2-001; intron 1

  OTTHUMT00000373360 ; SH3TC2-005; intron 1

  OTTHUMT00000373362 ; SH3TC2-007; intron 1

  OTTHUMT00000373358 ; SH3TC2-003; intron 1

  OTTHUMT00000373412 ; SH3TC2-013; intron 1

  OTTHUMT00000373361 ; SH3TC2-006; intron 1

  OTTHUMT00000373381 ; SH3TC2-012; intron 1

  OTTHUMT00000373359 ; SH3TC2-004; intron 1

  OTTHUMT00000252186 ; SH3TC2-001; intron 1

  OTTHUMT00000373360 ; SH3TC2-005; intron 1

  OTTHUMT00000373362 ; SH3TC2-007; intron 1

  OTTHUMT00000373358 ; SH3TC2-003; intron 1

  OTTHUMT00000373412 ; SH3TC2-013; intron 1

  OTTHUMT00000373361 ; SH3TC2-006; intron 1

  ENST00000504690 ; SH3TC2-012; intron 1

  ENST00000323829 ; SH3TC2-004; intron 1

  ENST00000515425 ; SH3TC2-001; intron 1

  ENST00000512049 ; SH3TC2-005; intron 1

  ENST00000513604 ; SH3TC2-007; intron 1

  ENST00000511307 ; SH3TC2-003; intron 1

  ENST00000511949 ; SH3TC2-013; intron 1

  ENST00000504091 ; SH3TC2-006; intron 1

  ENST00000394358 ; SH3TC2-201; intron 1

  ENST00000504690 ; SH3TC2-012; intron 1

  ENST00000323829 ; SH3TC2-004; intron 1

  ENST00000515425 ; SH3TC2-001; intron 1

  ENST00000512049 ; SH3TC2-005; intron 1

  ENST00000513604 ; SH3TC2-007; intron 1

  ENST00000511307 ; SH3TC2-003; intron 1

  ENST00000511949 ; SH3TC2-013; intron 1

  ENST00000504091 ; SH3TC2-006; intron 1

  ENST00000394358 ; SH3TC2-201; intron 1

  ENST00000504690 ; SH3TC2-012; intron 1

  ENST00000323829 ; SH3TC2-004; intron 1

  ENST00000515425 ; SH3TC2-001; intron 1

  ENST00000512049 ; SH3TC2-005; intron 1

  ENST00000513604 ; SH3TC2-007; intron 1

  ENST00000511307 ; SH3TC2-003; intron 1

  ENST00000511949 ; SH3TC2-013; intron 1

  ENST00000504091 ; SH3TC2-006; intron 1

  ENST00000394358 ; SH3TC2-201; intron 1

Database links

• ENTREZGENE: 693169;MIR584
• HGNC: 32840;MIR584

Mature sequence hsa-miR-584-5p

• Accession: MIMAT0003249
• Previous IDs: hsa-miR-584
• Sequence: 16 - uuaugguuugccugggacugag - 37
• Deep sequencing: 9661 reads, 20 experiments
• Evidence: experimental; Microarray [1], RT-PCR [1], SAGE [1], cloned [2-3]
• Validated targets:
  • TARBASE:hsa-miR-584-5p
• Predicted targets:
  • DIANA-MICROT:hsa-miR-584-5p
  • MICRORNA.ORG:hsa-miR-584-5p
  • MIRDB:hsa-miR-584-5p
  • RNA22-HSA:hsa-miR-584-5p
  • TARGETMINER:hsa-miR-584-5p
  • TARGETSCAN-VERT:hsa-miR-584

Mature sequence hsa-miR-584-3p

• Accession: MIMAT0022708
• Sequence: 55 - ucaguuccaggccaaccaggcu - 76
• Deep sequencing: 193 reads, 11 experiments
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-584-3p
  • MIRDB:hsa-miR-584-3p
  • TARGETMINER:hsa-miR-584-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:17616659 "Patterns of known and novel small RNAs in human cervical cancer" Lui WO, Pourmand N, Patterson BK, Fire A Cancer Res. 67:6031-6043(2007).